Integrating Hi-C and FISH data for modeling of the 3D organization of chromosomes
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Integrating Hi-C and FISH data for modeling of the 3D organization of chromosomes
Authors
Keywords
-
Journal
Nature Communications
Volume 10, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2019-05-03
DOI
10.1038/s41467-019-10005-6
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Reconstructing spatial organizations of chromosomes through manifold learning
- (2018) Guangxiang Zhu et al. NUCLEIC ACIDS RESEARCH
- 3D structures of individual mammalian genomes studied by single-cell Hi-C
- (2017) Tim J. Stevens et al. NATURE
- FISH-ing for captured contacts: towards reconciling FISH and 3C
- (2017) Geoffrey Fudenberg et al. NATURE METHODS
- De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture
- (2017) Michele Di Pierro et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Chromosome3D: reconstructing three-dimensional chromosomal structures from Hi-C interaction frequency data using distance geometry simulated annealing
- (2016) Badri Adhikari et al. BMC GENOMICS
- Nucleoporin-mediated regulation of cell identity genes
- (2016) Arkaitz Ibarra et al. GENES & DEVELOPMENT
- An integrated 3-Dimensional Genome Modeling Engine for data-driven simulation of spatial genome organization
- (2016) Przemysław Szałaj et al. GENOME RESEARCH
- Super-resolution imaging reveals distinct chromatin folding for different epigenetic states
- (2016) Alistair N. Boettiger et al. NATURE
- Micro-C XL: assaying chromosome conformation from the nucleosome to the entire genome
- (2016) Tsung-Han S Hsieh et al. NATURE METHODS
- Mapping 3D genome architecture through in situ DNase Hi-C
- (2016) Vijay Ramani et al. Nature Protocols
- Mapping the 3D genome: Aiming for consilience
- (2016) Job Dekker NATURE REVIEWS MOLECULAR CELL BIOLOGY
- 3D-GNOME: an integrated web service for structural modeling of the 3D genome
- (2016) Przemyslaw Szalaj et al. NUCLEIC ACIDS RESEARCH
- Three-dimensional chromosome structures from energy landscape
- (2016) Gamze Gürsoy et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Transferable model for chromosome architecture
- (2016) Michele Di Pierro et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Population-based 3D genome structure analysis reveals driving forces in spatial genome organization
- (2016) Harianto Tjong et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Spatial organization of chromatin domains and compartments in single chromosomes
- (2016) Siyuan Wang et al. SCIENCE
- Mining 3D genome structure populations identifies major factors governing the stability of regulatory communities
- (2016) Chao Dai et al. Nature Communications
- Inferential Structure Determination of Chromosomes from Single-Cell Hi-C Data
- (2016) Simeon Carstens et al. PLoS Computational Biology
- Identification of Gene Positioning Factors Using High-Throughput Imaging Mapping
- (2015) Sigal Shachar et al. CELL
- What are super-enhancers?
- (2015) Sebastian Pott et al. NATURE GENETICS
- dbSUPER: a database of super-enhancers in mouse and human genome
- (2015) Aziz Khan et al. NUCLEIC ACIDS RESEARCH
- Inferential modeling of 3D chromatin structure
- (2015) Siyu Wang et al. NUCLEIC ACIDS RESEARCH
- Nanoscale spatial organization of theHoxDgene cluster in distinct transcriptional states
- (2015) Pierre J. Fabre et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes
- (2015) Brian J. Beliveau et al. Nature Communications
- A statistical approach for inferring the 3D structure of the genome
- (2014) N. Varoquaux et al. BIOINFORMATICS
- Predictive Polymer Modeling Reveals Coupled Fluctuations in Chromosome Conformation and Transcription
- (2014) Luca Giorgetti et al. CELL
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression
- (2014) F. Ay et al. GENOME RESEARCH
- 3D genome reconstruction from chromosomal contacts
- (2014) Annick Lesne et al. NATURE METHODS
- From a melt of rings to chromosome territories: the role of topological constraints in genome folding
- (2014) Jonathan D Halverson et al. REPORTS ON PROGRESS IN PHYSICS
- 3D Chromosome Modeling with Semi-Definite Programming and Hi-C Data
- (2013) ZhiZhuo Zhang et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Single-cell Hi-C reveals cell-to-cell variability in chromosome structure
- (2013) Takashi Nagano et al. NATURE
- Bayesian Inference of Spatial Organizations of Chromosomes
- (2013) Ming Hu et al. PLoS Computational Biology
- Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome
- (2012) Tom Sexton et al. CELL
- Physical tethering and volume exclusion determine higher-order genome organization in budding yeast
- (2012) H. Tjong et al. GENOME RESEARCH
- Independence of Repressive Histone Marks and Chromatin Compaction during Senescent Heterochromatic Layer Formation
- (2012) Tamir Chandra et al. MOLECULAR CELL
- Gene Density, Transcription, and Insulators Contribute to the Partition of the Drosophila Genome into Physical Domains
- (2012) Chunhui Hou et al. MOLECULAR CELL
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Spatial partitioning of the regulatory landscape of the X-inactivation centre
- (2012) Elphège P. Nora et al. NATURE
- Recovering ensembles of chromatin conformations from contact probabilities
- (2012) Dario Meluzzi et al. NUCLEIC ACIDS RESEARCH
- Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling
- (2011) Mathieu Rousseau et al. BMC BIOINFORMATICS
- Genome architectures revealed by tethered chromosome conformation capture and population-based modeling
- (2011) Reza Kalhor et al. NATURE BIOTECHNOLOGY
- Distinct Epigenomic Landscapes of Pluripotent and Lineage-Committed Human Cells
- (2010) R. David Hawkins et al. Cell Stem Cell
- A three-dimensional model of the yeast genome
- (2010) Zhijun Duan et al. NATURE
- The NIH Roadmap Epigenomics Mapping Consortium
- (2010) Bradley E Bernstein et al. NATURE BIOTECHNOLOGY
- The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules
- (2010) Davide Baù et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- An oestrogen-receptor-α-bound human chromatin interactome
- (2009) Melissa J. Fullwood et al. NATURE
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started