Evolution of Superinfection Immunity in Cluster A Mycobacteriophages

Yet More Evidence of Collusion: a New Viral Defense System Encoded by Gordonia Phage CarolAnn

(2019) Matthew T. Montgomery et al.   mBio

More Evidence of Collusion: a New Prophage-Mediated Viral Defense System Encoded by Mycobacteriophage Sbash

(2019) Gabrielle M. Gentile et al.   mBio

Systematic discovery of antiphage defense systems in the microbial pangenome

(2018) Shany Doron et al.   SCIENCE

Evolutionary potential of transcription factors for gene regulatory rewiring

(2018) Claudia Igler et al.   Nature Ecology & Evolution

Bacteriophages of Gordonia spp. Display a Spectrum of Diversity and Genetic Relationships

(2017) Welkin H. Pope et al.   mBio

Prophage-mediated defence against viral attack and viral counter-defence

(2017) Rebekah M. Dedrick et al.   Nature Microbiology

Bacteriophage evolution differs by host, lifestyle and genome

(2017) Travis N. Mavrich et al.   Nature Microbiology

TFBSTools: an R/bioconductor package for transcription factor binding site analysis

(2016) Ge Tan et al.   BIOINFORMATICS

Prophages mediate defense against phage infection through diverse mechanisms

(2016) Joseph Bondy-Denomy et al.   ISME Journal

Function, expression, specificity, diversity and incompatibility of actinobacteriophageparABSsystems

(2016) Rebekah M. Dedrick et al.   MOLECULAR MICROBIOLOGY

Mycobacteriophage-repressor-mediated immunity as a selectable genetic marker: Adephagia and BPs repressor selection

(2015) Zaritza O. Petrova et al.   MICROBIOLOGY-SGM

An Unusual Phage Repressor Encoded by Mycobacteriophage BPs

(2015) Valerie M. Villanueva et al.   PLoS One

Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity

(2015) Welkin H Pope et al.   eLife

A Broadly Implementable Research Course in Phage Discovery and Genomics for First-Year Undergraduate Students

(2014) T. C. Jordan et al.   mBio

Evolutionary Relationships among Actinophages and a Putative Adaptation for Growth in Streptomyces spp.

(2013) M. C. M. Smith et al.   JOURNAL OF BACTERIOLOGY

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

EvolView, an online tool for visualizing, annotating and managing phylogenetic trees

(2012) Huangkai Zhang et al.   NUCLEIC ACIDS RESEARCH

Phamerator: a bioinformatic tool for comparative bacteriophage genomics

(2011) Steven G Cresawn et al.   BMC BIOINFORMATICS

Within-host competition determines reproductive success of temperate bacteriophages

(2011) Dominik Refardt   ISME Journal

Expanding the Diversity of Mycobacteriophages: Insights into Genome Architecture and Evolution

(2011) Welkin H. Pope et al.   PLoS One

Mycobacteriophages: Genes and Genomes

(2010) Graham F. Hatfull   Annual Review of Microbiology

webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser

(2010) Ari Löytynoja et al.   BMC BIOINFORMATICS

Comparative Genomic Analysis of 60 Mycobacteriophage Genomes: Genome Clustering, Gene Acquisition, and Gene Size

(2010) Graham F. Hatfull et al.   JOURNAL OF MOLECULAR BIOLOGY

Inhibition of Superinfection and the Evolution of Viral Latency

(2010) T. W. Berngruber et al.   JOURNAL OF VIROLOGY

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Enzymatic assembly of DNA molecules up to several hundred kilobases

(2009) Daniel G Gibson et al.   NATURE METHODS

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Lsr2 of Mycobacterium Represents a Novel Class of H-NS-Like Proteins

(2008) B. R. G. Gordon et al.   JOURNAL OF BACTERIOLOGY

Identification of three cytotoxic early proteins of mycobacteriophage L5 leading to growth inhibition in Mycobacterium smegmatis

(2008) J. Rybniker et al.   MICROBIOLOGY-SGM

BRED: A Simple and Powerful Tool for Constructing Mutant and Recombinant Bacteriophage Genomes

(2008) Laura J. Marinelli et al.   PLoS One