Next-generation sequencing-based bulked segregant analysis for QTL mapping in the heterozygous species Brassica rapa

Brassica rapa Genome 2.0: A Reference Upgrade through Sequence Re-assembly and Gene Re-annotation

(2017) Chengcheng Cai et al.   Molecular Plant

Identification of QTLs with additive, epistatic, and QTL × environment interaction effects for the bolting trait in Brassica rapa L.

(2016) Yating Liu et al.   EUPHYTICA

Fine mapping and candidate gene analysis of Brtri1, a gene controlling trichome development in Chinese cabbage (Brassica rapa L. ssp pekinensis)

(2016) X.L. Ye et al.   GENETICS AND MOLECULAR RESEARCH

Subgenome parallel selection is associated with morphotype diversification and convergent crop domestication in Brassica rapa and Brassica oleracea

(2016) Feng Cheng et al.   NATURE GENETICS

Bulked sample analysis in genetics, genomics and crop improvement

(2016) Cheng Zou et al.   PLANT BIOTECHNOLOGY JOURNAL

Fine Mapping and Whole-Genome Resequencing Identify the Seed Coat Color Gene in Brassica rapa

(2016) Yanhua Wang et al.   PLoS One

Selection during crop diversification involves correlated evolution of the circadian clock and ecophysiological traits in Brassica rapa

(2015) Yulia Yarkhunova et al.   NEW PHYTOLOGIST

Using next-generation sequencing to isolate mutant genes from forward genetic screens

(2014) Korbinian Schneeberger   NATURE REVIEWS GENETICS

Genome triplication drove the diversification of Brassica plants

(2014) Feng Cheng et al.   Horticulture Research

MutMap-Gap: whole-genome resequencing of mutant F2 progeny bulk combined withde novoassembly of gap regions identifies the rice blast resistance genePii

(2013) Hiroki Takagi et al.   NEW PHYTOLOGIST

Deciphering the Diploid Ancestral Genome of the MesohexaploidBrassica rapa

(2013) Feng Cheng et al.   PLANT CELL

QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

(2013) Hiroki Takagi et al.   PLANT JOURNAL

MutMap+: Genetic Mapping and Mutant Identification without Crossing in Rice

(2013) Rym Fekih et al.   PLoS One

The role of epigenetics in hybrid vigour

(2013) Michael Groszmann et al.   TRENDS IN GENETICS

Genome sequencing reveals agronomically important loci in rice using MutMap

(2012) Akira Abe et al.   NATURE BIOTECHNOLOGY

Heterosis of Arabidopsis hybrids between C24 and Col is associated with increased photosynthesis capacity

(2012) R. Fujimoto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of quantitative trait loci controlling late bolting in Chinese cabbage (Brassica rapa L.) parental line Nou 6 gou

(2011) Tomohiro Kakizaki et al.   BREEDING SCIENCE

The genome of the mesopolyploid crop species Brassica rapa

(2011) Xiaowu Wang et al.   NATURE GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS