Ribosome profiling analysis identified a KRAS-interacting microprotein that represses oncogenic signaling in hepatocellular carcinoma cells

The small peptide world in long noncoding RNAs

(2018) Seo-Won Choi et al.   BRIEFINGS IN BIOINFORMATICS

De novo annotation and characterization of the translatome with ribosome profiling data

(2018) Zhengtao Xiao et al.   NUCLEIC ACIDS RESEARCH

The cancer-associated microprotein CASIMO1 controls cell proliferation and interacts with squalene epoxidase modulating lipid droplet formation

(2018) Maria Polycarpou-Schwarz et al.   ONCOGENE

MOXI Is a Mitochondrial Micropeptide That Enhances Fatty Acid β-Oxidation

(2018) Catherine A. Makarewich et al.   Cell Reports

Mitoregulin: A lncRNA-Encoded Microprotein that Supports Mitochondrial Supercomplexes and Respiratory Efficiency

(2018) Colleen S. Stein et al.   Cell Reports

Micropeptides Encoded in Transcripts Previously Identified as Long Noncoding RNAs: A New Chapter in Transcriptomics and Proteomics

(2018) Fouzia Yeasmin et al.   Frontiers in Genetics

miR-372 and miR-373 enhance the stemness of colorectal cancer cells by repressing differentiation signaling pathways

(2018) Lu-Qin Wang et al.   Molecular Oncology

Cryptotanshinone suppresses key onco-proliferative and drugresistant pathways of chronic myeloid leukemia by targeting STAT5 and STAT3 phosphorylation

(2018) Bowen Dong et al.   Science China-Life Sciences

Wild type Kirsten rat sarcoma is a novel microRNA-622-regulated therapeutic target for hepatocellular carcinoma and contributes to sorafenib resistance

(2017) Peter Dietrich et al.   GUT

Targeting metabolic reprogramming in KRAS-driven cancers

(2017) Kenji Kawada et al.   International Journal of Clinical Oncology

A Peptide Encoded by a Putative lncRNA HOXB-AS3 Suppresses Colon Cancer Growth

(2017) Jin-Zhou Huang et al.   MOLECULAR CELL

Conservation analysis of long non-coding RNAs in plants

(2017) Pingchuan Deng et al.   Science China-Life Sciences

Recent progress in mass spectrometry proteomics for biomedical research

(2017) Xu Li et al.   Science China-Life Sciences

The microprotein Minion controls cell fusion and muscle formation

(2017) Qiao Zhang et al.   Nature Communications

Viral Infection Identifies Micropeptides Differentially Regulated in smORF-Containing lncRNAs

(2017) Brandon Razooky et al.   Genes

The lncRNA MALAT1 acts as a competing endogenous RNA to regulate KRAS expression by sponging miR-217 in pancreatic ductal adenocarcinoma

(2017) Pingping Liu et al.   Scientific Reports

mTORC1 and muscle regeneration are regulated by the LINC00961-encoded SPAR polypeptide

(2016) Akinobu Matsumoto et al.   NATURE

A Micropeptide Encoded by a Putative Long Noncoding RNA Regulates Muscle Performance

(2015) Douglas M. Anderson et al.   CELL

A Human Interactome in Three Quantitative Dimensions Organized by Stoichiometries and Abundances

(2015) Marco Y. Hein et al.   CELL

Detecting actively translated open reading frames in ribosome profiling data

(2015) Lorenzo Calviello et al.   NATURE METHODS

Many lncRNAs, 5’UTRs, and pseudogenes are translated and some are likely to express functional proteins

(2015) Zhe Ji et al.   eLife

MicroRNA-mediated regulation of KRAS in cancer

(2014) Minlee Kim et al.   Journal of Hematology & Oncology

Analysis of nuclear RNA interference in human cells by subcellular fractionation and Argonaute loading

(2014) Keith T Gagnon et al.   Nature Protocols

Ribosome Profiling Reveals Pervasive Translation Outside of Annotated Protein-Coding Genes

(2014) Nicholas T. Ingolia et al.   Cell Reports

Long non-coding RNAs as a source of new peptides

(2014) Jorge Ruiz-Orera et al.   eLife

Peptidomic discovery of short open reading frame–encoded peptides in human cells

(2012) Sarah A Slavoff et al.   Nature Chemical Biology

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Ras oncogenes: split personalities

(2008) Antoine E. Karnoub et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY