Habitat preference modulates trans-oceanic dispersal in a terrestrial vertebrate

Rethinking phylogenetic comparative methods

(2018) Josef C Uyeda et al.   SYSTEMATIC BIOLOGY

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Trait-Dependent Biogeography: (Re)Integrating Biology into Probabilistic Historical Biogeographical Models

(2018) Jeet Sukumaran et al.   TRENDS IN ECOLOGY & EVOLUTION

Phylogenetic evidence for mid-Cenozoic turnover of a diverse continental biota

(2017) Paul M. Oliver et al.   Nature Ecology & Evolution

Biogeographical history and coalescent species delimitation of Pacific island skinks (Squamata: Scincidae:Emoia cyanuraspecies group)

(2016) Elaine R. Klein et al.   JOURNAL OF BIOGEOGRAPHY

Evaluating the influence of connectivity and distance on biogeographical patterns in the south-western deserts of North America

(2016) Matthew H. Van Dam et al.   JOURNAL OF BIOGEOGRAPHY

Phylogenomics at the tips: inferring lineages and their demographic history in a tropical lizard, Carlia amax

(2016) Sally Potter et al.   MOLECULAR ECOLOGY

Combining phylogenomic and supermatrix approaches, and a time-calibrated phylogeny for squamate reptiles (lizards and snakes) based on 52 genes and 4162 species

(2016) Yuchi Zheng et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Convergence across a continent: adaptive diversification in a recent radiation of Australian lizards

(2016) Mozes P. K. Blom et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Computational Performance and Statistical Accuracy of *BEAST and Comparisons with Other Methods

(2016) Huw A. Ogilvie et al.   SYSTEMATIC BIOLOGY

ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes

(2015) Siavash Mirarab et al.   BIOINFORMATICS

Deep divergence and structure in the Tropical Oceanic Pacific: a multilocus phylogeography of a widespread gekkonid lizard (Squamata: Gekkonidae: Gehyra oceanica )

(2015) Maria A. Tonione et al.   JOURNAL OF BIOGEOGRAPHY

Ancient DNA and the human settlement of the Pacific: A review

(2015) Elizabeth Matisoo-Smith   JOURNAL OF HUMAN EVOLUTION

Exon capture phylogenomics: efficacy across scales of divergence

(2015) Jason G. Bragg et al.   Molecular Ecology Resources

Biogeography of worm lizards (Amphisbaenia) driven by end-Cretaceous mass extinction

(2015) N. R. Longrich et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Biogeography by revelation: investigating a world shaped by miracles

(2015) Michael Heads   AUSTRALIAN SYSTEMATIC BOTANY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Novel Information Theory-Based Measures for Quantifying Incongruence among Phylogenetic Trees

(2014) Leonidas Salichos et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Unsolved Challenge to Phylogenetic Correlation Tests for Categorical Characters

(2014) Wayne P. Maddison et al.   SYSTEMATIC BIOLOGY

Model Selection in Historical Biogeography Reveals that Founder-Event Speciation Is a Crucial Process in Island Clades

(2014) Nicholas J. Matzke   SYSTEMATIC BIOLOGY

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes

(2013) R Pyron et al.   BMC EVOLUTIONARY BIOLOGY

De novotranscriptomic analyses for non-model organisms: an evaluation of methods across a multi-species data set

(2013) Sonal Singhal   Molecular Ecology Resources

Bayesian Analysis of Biogeography when the Number of Areas is Large

(2013) Michael J. Landis et al.   SYSTEMATIC BIOLOGY

Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales

(2012) Ke Bi et al.   BMC GENOMICS

Global biogeography and diversification of palms sheds light on the evolution of tropical lineages. I. Historical biogeography

(2012) William J. Baker et al.   JOURNAL OF BIOGEOGRAPHY

Disentangling dispersal, vicariance and adaptive radiation patterns: A case study using armyworms in the pest genus Spodoptera (Lepidoptera: Noctuidae)

(2012) Gael J. Kergoat et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Long-distance dispersal: a framework for hypothesis testing

(2011) Rosemary G. Gillespie et al.   TRENDS IN ECOLOGY & EVOLUTION

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Mammalian biodiversity on Madagascar controlled by ocean currents

(2010) Jason R. Ali et al.   NATURE

Accommodating Heterogenous Rates of Evolution in Molecular Divergence Dating Methods: An Example Using Intercontinental Dispersal of Plestiodon (Eumeces) Lizards

(2010) Matthew C. Brandley et al.   SYSTEMATIC BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Prospects and challenges for parametric models in historical biogeographical inference

(2009) Richard H. Ree et al.   JOURNAL OF BIOGEOGRAPHY

Phylogenetic biome conservatism on a global scale

(2009) Michael D. Crisp et al.   NATURE

Calculating Bootstrap Probabilities of Phylogeny Using Multilocus Sequence Data

(2008) T.-K. Seo   MOLECULAR BIOLOGY AND EVOLUTION

The age and origin of the Pacific islands: a geological overview

(2008) V. E Neall et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Maximum Likelihood Inference of Geographic Range Evolution by Dispersal, Local Extinction, and Cladogenesis

(2008) Richard H. Ree et al.   SYSTEMATIC BIOLOGY

Mechanisms of long-distance seed dispersal

(2008) Ran Nathan et al.   TRENDS IN ECOLOGY & EVOLUTION