Archaeal community variation in the Qinhuangdao coastal aquaculture zone revealed by high-throughput sequencing

Metatranscriptomic Signatures Associated With Phytoplankton Regime Shift From Diatom Dominance to a Dinoflagellate Bloom

(2019) Yaqun Zhang et al.   Frontiers in Microbiology

Primary Production in the Water Column as Major Structuring Element of the Biogeographical Distribution and Function of Archaea in Deep-Sea Sediments of the Central Pacific Ocean

(2019) Franziska Wemheuer et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Relationship between phytoplankton community succession and environmental parameters in Qinhuangdao coastal areas, China: A region with recurrent brown tide outbreaks

(2018) Lei Cui et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Significant activities of extracellular enzymes from a brown tide in the coastal waters of Qinhuangdao, China

(2018) Linjian Ou et al.   HARMFUL ALGAE

Environmental DNA metabarcoding of benthic bacterial communities indicates the benthic footprint of salmon aquaculture

(2018) Thorsten Stoeck et al.   MARINE POLLUTION BULLETIN

Diversity and distribution of Archaea in global estuarine ecosystems

(2018) Xiaobo Liu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Adaptive shifts of bacterioplankton communities in response to nitrogen enrichment in a highly polluted river

(2018) Yuzhan Yang et al.   ENVIRONMENTAL POLLUTION

Localized high abundance of Marine Group II archaea in the subtropical Pearl River Estuary: implications for their niche adaptation

(2017) Wei Xie et al.   ENVIRONMENTAL MICROBIOLOGY

Genomic exploration of the diversity, ecology, and evolution of the archaeal domain of life

(2017) Anja Spang et al.   SCIENCE

Diversity of Extremely Halophilic Archaeal and Bacterial Communities from Commercial Salts

(2017) Ashagrie Gibtan et al.   Frontiers in Microbiology

Stratified Bacterial and Archaeal Community in Mangrove and Intertidal Wetland Mudflats Revealed by High Throughput 16S rRNA Gene Sequencing

(2017) Zhichao Zhou et al.   Frontiers in Microbiology

Distinct Seasonal Patterns of Bacterioplankton Abundance and Dominance of Phyla α-Proteobacteria and Cyanobacteria in Qinhuangdao Coastal Waters Off the Bohai Sea

(2017) Yaodong He et al.   Frontiers in Microbiology

Controlling harmful algae blooms using aluminum-modified clay

(2016) Yang Liu et al.   MARINE POLLUTION BULLETIN

Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling

(2015) Cindy J. Castelle et al.   CURRENT BIOLOGY

Multi-scale phylogenetic heterogeneity of archaea, bacteria, methanogens and methanotrophs in lake sediments

(2015) Elodie Billard et al.   HYDROBIOLOGIA

Physiological and genomic characterization of two novel marine thaumarchaeal strains indicates niche differentiation

(2015) Barbara Bayer et al.   ISME Journal

Ecology and Distribution of Thaumarchaea in the Deep Hypolimnion of Lake Maggiore

(2015) Manuela Coci et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Diversity and Distribution of Archaea in the Mangrove Sediment of Sundarbans

(2015) Anish Bhattacharyya et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Marine Group II Archaea, potentially important players in the global ocean carbon cycle

(2015) Chuanlun L. Zhang et al.   Frontiers in Microbiology

Chemoautotrophic growth of ammonia-oxidizing Thaumarchaeota enriched from a pelagic redox gradient in the Baltic Sea

(2015) Carlo Berg et al.   Frontiers in Microbiology

A Mesophilic, Autotrophic, Ammonia-Oxidizing Archaeon of Thaumarchaeal Group I.1a Cultivated from a Deep Oligotrophic Soil Horizon

(2014) Man-Young Jung et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Distribution of sediment bacterial and archaeal communities in plateau freshwater lakes

(2014) Jingxu Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Insights into the metabolism, lifestyle and putative evolutionary history of the novel archaeal phylum ‘Diapherotrites’

(2014) Noha H Youssef et al.   ISME Journal

Linking activity and function to ecosystem dynamics in a coastal bacterioplankton community

(2014) Scott M. Gifford et al.   Frontiers in Microbiology

Archaea in Biogeochemical Cycles

(2013) Pierre Offre et al.   Annual Review of Microbiology

Abundance and community structure of ammonia-oxidizing microorganisms in reservoir sediment and adjacent soils

(2013) Xiaoyan Wang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Pollution status of the Bohai Sea: An overview of the environmental quality assessment related trace metals

(2013) Xuelu Gao et al.   ENVIRONMENT INTERNATIONAL

Bacterial and archaeal community structure in the surface microlayer of high mountain lakes examined under two atmospheric aerosol loading scenarios

(2013) Maria Vila-Costa et al.   FEMS MICROBIOLOGY ECOLOGY

Impacts of Mariculture on the Diversity of Bacterial Communities within Intertidal Sediments in the Northeast of China

(2013) Jialin Li et al.   MICROBIAL ECOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

(2013) Pelin Yilmaz et al.   NUCLEIC ACIDS RESEARCH

Global Ecological Pattern of Ammonia-Oxidizing Archaea

(2013) Huiluo Cao et al.   PLoS One

Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments

(2012) Kyoko Kubo et al.   ISME Journal

Zero-valent sulphur is a key intermediate in marine methane oxidation

(2012) Jana Milucka et al.   NATURE

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Sulfur Metabolizing Microbes Dominate Microbial Communities in Andesite-Hosted Shallow-Sea Hydrothermal Systems

(2012) Yao Zhang et al.   PLoS One

Correlating microbial community profiles with geochemical data in highly stratified sediments from the Arctic Mid-Ocean Ridge

(2012) S. L. Jorgensen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Mangrove trees affect the community structure and distribution of anammox bacteria at an anthropogenic-polluted mangrove in the Pearl River Delta reflected by 16S rRNA and hydrazine oxidoreductase (HZO) encoding gene analyses

(2011) Meng Li et al.   ECOTOXICOLOGY

Metagenomic comparison of microbial communities inhabiting confined and unconfined aquifer ecosystems

(2011) Renee J. Smith et al.   ENVIRONMENTAL MICROBIOLOGY

Water quality assessment by pollution-index method in the coastal waters of Hebei Province in western Bohai Sea, China

(2011) Shuguang Liu et al.   MARINE POLLUTION BULLETIN

Adaptation to Environmental Temperature Is a Major Determinant of Molecular Evolutionary Rates in Archaea

(2011) M. Groussin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Diversity and abundance of ammonia-oxidizing archaea and bacteria in polluted mangrove sediment

(2011) Huiluo Cao et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

High Abundance of Ammonia-Oxidizing Archaea in Coastal Waters, Determined Using a Modified DNA Extraction Method

(2010) H. Urakawa et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Distinct flavobacterial communities in contrasting water masses of the North Atlantic Ocean

(2010) Paola R Gómez-Pereira et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota

(2010) Anja Spang et al.   TRENDS IN MICROBIOLOGY

Anaerobic Oxidation of Methane: Progress with an Unknown Process

(2009) Katrin Knittel et al.   Annual Review of Microbiology

Abundance of Ammonia-Oxidizing Archaea and Bacteria along an Estuarine Salinity Gradient in Relation to Potential Nitrification Rates

(2009) A. E. Bernhard et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment

(2008) James I. Prosser et al.   ENVIRONMENTAL MICROBIOLOGY

Characterization of the depth-related changes in the microbial communities in Lake Hovsgol sediment by 16S rRNA gene-based approaches

(2008) Young-Do Nam et al.   JOURNAL OF MICROBIOLOGY

Significant contribution of Archaea to extant biomass in marine subsurface sediments

(2008) Julius S. Lipp et al.   NATURE

Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota

(2008) Céline Brochier-Armanet et al.   NATURE REVIEWS MICROBIOLOGY