Genetic characterisation of variants of the virulence plasmid, pSLT, in Salmonella enterica serovar Typhimurium provides evidence of a variety of evolutionary directions consistent with vertical rather than horizontal transmission

Comparative genomics of Australian and international isolates of Salmonella Typhimurium: correlation of core genome evolution with CRISPR and prophage profiles

(2017) Songzhe Fu et al.   Scientific Reports

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The complete plasmid sequences of Salmonella enterica serovar Typhimurium U288

(2014) Steven P.T. Hooton et al.   PLASMID

Distribution of Gifsy-3 and of Variants of ST64B and Gifsy-1 Prophages amongst Salmonella enterica Serovar Typhimurium Isolates: Evidence that Combinations of Prophages Promote Clonality

(2014) Lester Hiley et al.   PLoS One

Evolution and dynamics of megaplasmids with genome sizes larger than 100 kb in the Bacillus cereus group

(2013) Jinshui Zheng et al.   BMC EVOLUTIONARY BIOLOGY

Inheritance of the Salmonella virulence plasmids: Mostly vertical and rarely horizontal

(2012) Ye Feng et al.   INFECTION GENETICS AND EVOLUTION

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Virulence plasmid interchange between strains ATCC 14028, LT2, and SL1344 of Salmonella enterica serovar Typhimurium

(2010) Meritxell García-Quintanilla et al.   PLASMID

GenomeVx: simple web-based creation of editable circular chromosome maps

(2008) G. C. Conant et al.   BIOINFORMATICS

Conjugal Transfer of the Salmonella enterica Virulence Plasmid in the Mouse Intestine

(2008) M. Garcia-Quintanilla et al.   JOURNAL OF BACTERIOLOGY