Spatial registration of serial microscopic brain images to three-dimensional reference atlases with the QuickNII tool

Data integration through brain atlasing: Human Brain Project tools and strategies

(2018) Ingvild E. Bjerke et al.   EUROPEAN PSYCHIATRY

An automated mapping method for Nissl-stained mouse brain histologic sections

(2018) Smadar Shiffman et al.   JOURNAL OF NEUROSCIENCE METHODS

An interactive framework for whole-brain maps at cellular resolution

(2017) Daniel Fürth et al.   NATURE NEUROSCIENCE

Mapping and Analysis of the Connectome of Sympathetic Premotor Neurons in the Rostral Ventrolateral Medulla of the Rat Using a Volumetric Brain Atlas

(2017) Bowen Dempsey et al.   Frontiers in Neural Circuits

aMAP is a validated pipeline for registration and segmentation of high-resolution mouse brain data

(2016) Christian J. Niedworok et al.   Nature Communications

3D Reconstructed Cyto-, Muscarinic M2 Receptor, and Fiber Architecture of the Rat Brain Registered to the Waxholm Space Atlas

(2016) Nicole Schubert et al.   Frontiers in Neuroanatomy

High-throughput 3D whole-brain quantitative histopathology in rodents

(2016) Michel E. Vandenberghe et al.   Scientific Reports

Feeding the human brain model

(2015) Paul Tiesinga et al.   CURRENT OPINION IN NEUROBIOLOGY

Waxholm Space atlas of the rat brain hippocampal region: Three-dimensional delineations based on magnetic resonance and diffusion tensor imaging

(2015) Lisa J. Kjonigsen et al.   NEUROIMAGE

The Scalable Brain Atlas: Instant Web-Based Access to Public Brain Atlases and Related Content

(2015) Rembrandt Bakker et al.   NEUROINFORMATICS

Three-Dimensional Histology Volume Reconstruction of Axonal Tract Tracing Data: Exploring Topographical Organization in Subcortical Projections from Rat Barrel Cortex

(2015) Izabela M. Zakiewicz et al.   PLoS One

A Map of Functional Synaptic Connectivity in the Mouse Anteroventral Cochlear Nucleus

(2014) L. Campagnola et al.   JOURNAL OF NEUROSCIENCE

A mesoscale connectome of the mouse brain

(2014) Seung Wook Oh et al.   NATURE

Waxholm Space atlas of the Sprague Dawley rat brain

(2014) Eszter A. Papp et al.   NEUROIMAGE

3D Brain Atlas Reconstructor Service—Online Repository of Three-Dimensional Models of Brain Structures

(2013) Piotr Majka et al.   NEUROINFORMATICS

Serial two-photon tomography for automated ex vivo mouse brain imaging

(2012) Timothy Ragan et al.   NATURE METHODS

Workflow and Atlas System for Brain-Wide Mapping of Axonal Connectivity in Rat

(2011) Izabela M. Zakiewicz et al.   PLoS One

A Proposal for a Coordinated Effort for the Determination of Brainwide Neuroanatomical Connectivity in Model Organisms at a Mesoscopic Scale

(2009) Jason W. Bohland et al.   PLoS Computational Biology