The application of CRISPR‐Cas for single species identification from environmental DNA

A quantitative PCR-based environmental DNA assay for detecting Atlantic salmon (Salmo salar L.)

(2018) Siobhán Atkinson et al.   AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS

Point-of-care diagnostic assay for the detection of Zika virus using the recombinase polymerase amplification method

(2018) Nadina I. Vasileva Wand et al.   JOURNAL OF GENERAL VIROLOGY

Catching the fish with the worm: a case study on eDNA detection of the monogenean parasite Gyrodactylus salaris and two of its hosts, Atlantic salmon (Salmo salar) and rainbow trout (Oncorhynchus mykiss)

(2018) Johannes C. Rusch et al.   Parasites & Vectors

CRISPR-Cas12a target binding unleashes indiscriminate single-stranded DNase activity

(2018) Janice S. Chen et al.   SCIENCE

Multiplexed and portable nucleic acid detection platform with Cas13, Cas12a, and Csm6

(2018) Jonathan S. Gootenberg et al.   SCIENCE

eDNA detection of corallivorous seastar (Acanthaster cf. solaris) outbreaks on the Great Barrier Reef using digital droplet PCR

(2018) Sven Uthicke et al.   CORAL REEFS

Core Concept: Environmental DNA helps researchers track pythons and other stealthy creatures

(2018) Carolyn Beans   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Development of a sensitive detection method to survey pelagic biodiversity using eDNA and quantitative PCR: a case study of devil ray at seamounts

(2017) Laura M. Gargan et al.   MARINE BIOLOGY

Environmental DNA metabarcoding: Transforming how we survey animal and plant communities

(2017) Kristy Deiner et al.   MOLECULAR ECOLOGY

Nucleic acid detection with CRISPR-Cas13a/C2c2

(2017) Jonathan S. Gootenberg et al.   SCIENCE

Environmental DNA (eDNA) detection and habitat occupancy of threatened spotted gar (Lepisosteus oculatus)

(2016) Margaret Boothroyd et al.   AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS

Crystal Structure of Cpf1 in Complex with Guide RNA and Target DNA

(2016) Takashi Yamano et al.   CELL

The CRISPR-associated DNA-cleaving enzyme Cpf1 also processes precursor CRISPR RNA

(2016) Ines Fonfara et al.   NATURE

Applications of CRISPR technologies in research and beyond

(2016) Rodolphe Barrangou et al.   NATURE BIOTECHNOLOGY

ColiSense, today's sample today: A rapid on-site detection of β-d-Glucuronidase activity in surface water as a surrogate for E. coli

(2016) Brendan Heery et al.   TALANTA

Fish environmental DNA is more concentrated in aquatic sediments than surface water

(2015) Cameron R. Turner et al.   BIOLOGICAL CONSERVATION

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

(2015) Philip Francis Thomsen et al.   BIOLOGICAL CONSERVATION

Cpf1 Is a Single RNA-Guided Endonuclease of a Class 2 CRISPR-Cas System

(2015) Bernd Zetsche et al.   CELL

Influence of sequence mismatches on the specificity of recombinase polymerase amplification technology

(2015) Rana K. Daher et al.   MOLECULAR AND CELLULAR PROBES

REVIEW: The detection of aquatic animal species using environmental DNA - a review of eDNA as a survey tool in ecology

(2014) Helen C. Rees et al.   JOURNAL OF APPLIED ECOLOGY

The room temperature preservation of filtered environmental DNA samples and assimilation into a phenol-chloroform-isoamyl alcohol DNA extraction

(2014) Mark A. Renshaw et al.   Molecular Ecology Resources

Predicting species distributions for conservation decisions

(2013) Antoine Guisan et al.   ECOLOGY LETTERS

Robust Detection of Rare Species Using Environmental DNA: The Importance of Primer Specificity

(2013) Taylor M. Wilcox et al.   PLoS One

Overview of the status of Atlantic salmon (Salmo salar) in the North Atlantic and trends in marine mortality

(2012) G. Chaput   ICES JOURNAL OF MARINE SCIENCE

Improved detection of an alien invasive species through environmental DNA barcoding: the example of the American bullfrogLithobates catesbeianus

(2012) Tony Dejean et al.   JOURNAL OF APPLIED ECOLOGY

Next-generation sequencing technologies for environmental DNA research

(2012) SHADI SHOKRALLA et al.   MOLECULAR ECOLOGY

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples

(2012) Philip Francis Thomsen et al.   PLoS One

FastCloning: a highly simplified, purification-free, sequence- and ligation-independent PCR cloning method

(2011) Chaokun Li et al.   BMC BIOTECHNOLOGY

Monitoring endangered freshwater biodiversity using environmental DNA

(2011) PHILIP FRANCIS THOMSEN et al.   MOLECULAR ECOLOGY

Persistence of Environmental DNA in Freshwater Ecosystems

(2011) Tony Dejean et al.   PLoS One

“Sight-unseen” detection of rare aquatic species using environmental DNA

(2011) Christopher L. Jerde et al.   Conservation Letters

The recruitment of Atlantic salmon in Europe

(2009) K. D. Friedland et al.   ICES JOURNAL OF MARINE SCIENCE

Species detection using environmental DNA from water samples

(2008) G. F. Ficetola et al.   Biology Letters

Assessing the global threat of invasive species to marine biodiversity

(2008) Jennifer L Molnar et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT