4.6 Article

The effect of altitudinal gradient on soil microbial community activity and structure in moso bamboo plantations

Journal

APPLIED SOIL ECOLOGY
Volume 98, Issue -, Pages 213-220

Publisher

ELSEVIER SCIENCE BV
DOI: 10.1016/j.apsoil.2015.10.018

Keywords

Microbial community; Bamboo; Phospholipid-derived fatty acids1; Denaturing gradient gel electrophoresis

Categories

Funding

  1. Ministry of Science and Technology, Taiwan (MOST) [104-2621-B-001-005]

Ask authors/readers for more resources

Moso bamboo (Phyllostachys edulis) is the fastest growing vegetation in the world, and it is widely distributed from low- to medium-elevation mountains in Taiwan. To understand how microbial activity and microbial community change with the elevation in bamboo plantations, we investigated soil microbial biomass, enzymes, and composition of bacteria and fungi in five moso bamboo plantations along an elevation gradient (600, 800, 1000, 1200 and 1400 m asl) in central Taiwan. The soil microbial community structure was determined by analysis of the phospholipid-derived fatty acid (PLEA) and denaturing gradient gel electrophoresis (DGGE) profiles. The soil microbial biomass C (C-mic) and biomass N (N-mic) increased along the elevation gradient. Similarly, the activities of soil enzymes, such as cellulase, xylanase and urease, increased along the elevation gradient. The proportion of PLFAs that were attributed to total bacteria, Gram-positive (G+) bacteria, and Gram-negative (G-) bacteria also increased with the increase in elevation. However, the ratio of G+/G- bacteria decreased along the elevation increase, indicating that bamboo plantations at low elevations (600 m, 800 m and 1000 m) contained less active soil organic matter than those at high elevations (1200 m and 1400 m). The results coincided with the availability of labile organic matter in bamboo plantation soils with lower C-mic/C-org and N-mic/N-tot in lower compared to higher elevations. Principle component analysis of PLEA content separated the low-elevation plantations from the high-elevation plantations. The DGGE analysis revealed that changes in both bacterial and fungal community structures were associated with the elevation gradient. Temperature changes along the elevation gradient contributed to variations in the soil microbial community in the bamboo plantations. (C) 2015 Elsevier B.V. All rights reserved.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.6
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Ecology

Community Structure of Active Aerobic Methanotrophs in Red Mangrove (Kandelia obovata) Soils Under Different Frequency of Tides

Yo-Jin Shiau, Yuanfeng Cai, Yu-Te Lin, Zhongjun Jia, Chih-Yu Chiu

MICROBIAL ECOLOGY (2018)

Article Environmental Sciences

The influences of thorny bamboo growth on the bacterial community in badland soils of southwestern Taiwan

Yu-Te Lin, William B. Whitman, David C. Coleman, Yo-Jin Shiau, Shih-Hao Jien, Chih-Yu Chiu

LAND DEGRADATION & DEVELOPMENT (2018)

Article Environmental Sciences

Response of Humic Acids and Soil Organic Matter to Vegetation Replacement in Subtropical High Mountain Forests

Hsueh-Ching Wang, Guanglong Tian, Chiou-Pin Chen, Ed-Haun Chang, Chiao-Ying Chou, Chyi-Rong Chiou, Chih-Yu Chiu

JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES (2019)

Article Environmental Sciences

Terrestrial loads of dissolved organic matter drive inter-annual carbon flux in subtropical lakes during times of drought

Chih-Yu Chiu, John R. Jones, James A. Rusak, Hao-Chi Lin, Keisuke Nakayama, Timothy K. Kratz, Wen-Cheng Liu, Sen-Lin Tang, Jeng-Wei Tsai

SCIENCE OF THE TOTAL ENVIRONMENT (2020)

Article Agronomy

Functional response of the soil microbial community to biochar applications

Wenhuan Xu, William B. Whitman, Michael J. Gundale, Chuan-Chi Chien, Chih-Yu Chiu

Summary: A global meta-analysis was conducted to investigate the effects of biochar on soil microbial communities, showing that biochar addition can increase arbuscular mycorrhizal fungal abundance and microbial biomass C, while decreasing soil respiration and actinomycetes abundance. The study also revealed that fungal abundance is the dominant factor affecting the response of bacterial abundance to biochar addition.

GLOBAL CHANGE BIOLOGY BIOENERGY (2021)

Article Environmental Sciences

Improvements in Soil C and N Compositions After 40 and 80 Years of Reforestation in Subtropical Low Mountain Forests

Yo-Jin Shiau, Ed-Haun Chang, Guanglong Tian, Tsai-Huei Chen, Chih-Yu Chiu

JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES (2020)

Article Microbiology

Niche Differentiation of Active Methane-Oxidizing Bacteria in Estuarine Mangrove Forest Soils in Taiwan

Yo-Jin Shiau, Chiao-Wen Lin, Yuanfeng Cai, Zhongjun Jia, Yu-Te Lin, Chih-Yu Chiu

MICROORGANISMS (2020)

Article Forestry

Biogeographic Changes in Forest Soil Microbial Communities of Offshore Islands-A Case Study of Remote Islands in Taiwan

Ed-Haun Chang, Isheng Jason Tsai, Shih-Hao Jien, Guanglong Tian, Chih-Yu Chiu

Summary: This study identified significant differences in soil microbial communities across islands in Taiwan, with higher soil organic matter, pH, urease, and PLFA biomass on tropical volcanic islands compared to subtropical granite islands. Soil enzyme activities were positively correlated with soil organic matter and total nitrogen, and soil parent materials and climatic differences were critical factors affecting soil microbial community structure.

FORESTS (2021)

Article Environmental Sciences

Influence of Thermal Stratification on Seasonal Net Ecosystem Production and Dissolved Inorganic Carbon in a Shallow Subtropical Lake

Hao-Chi Lin, Chih-Yu Chiu, Jeng-Wei Tsai, Wen-Cheng Liu, Kazufumi Tada, Keisuke Nakayama

Summary: The study aimed to investigate the influence of thermal stratification on DIC dynamics in shallow subtropical lakes. The results showed that thermal stratification suppressed vertical mixing in the lower layer during spring to summer, leading to the accumulation of large amounts of DIC. In autumn and winter, the lake was well mixed, resulting in even distribution of DIC.

JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES (2021)

Review Forestry

Dynamics of Methane in Mangrove Forest: Will It Worsen with Decreasing Mangrove Forests?

Hironori Arai, Kazuyuki Inubushi, Chih-Yu Chiu

Summary: Mangrove forests play a significant role in carbon sequestration, but their impact on methane emissions is still controversial, likely influenced by environmental changes, exposure to oxygen, and anthropogenic impacts. Protecting ecosystems is crucial in reducing CH4 emissions and evaluating emission status.

FORESTS (2021)

Article Forestry

Composition and Activity of N2-Fixing Microorganisms in Mangrove Forest Soils

Yo-Jin Shiau, Yu-Te Lin, Rita S. W. Yam, Ed-Haun Chang, Jhe-Ming Wu, Tsu-Hsuan Hsu, Chih-Yu Chiu

Summary: The study found that nitrogenase activity and diazotrophic abundance in mangrove forests varied between upstream and downstream environments, suggesting that these factors may not be positively correlated. Additionally, sulfate-reducing bacteria were identified as potentially major active diazotrophs in this environment.

FORESTS (2021)

Article Plant Sciences

Sequestration of P fractions in the soils of an incipient ferralisation chronosequence on a humid tropical volcanic island

Chih-Yu Chiu, Ian Baillie, Shih-Hao Jien, Liam Hallett, Stephen Hallett

Summary: Phosphorus (P) is the limiting nutrient in many mature tropical forests and as soils age, remaining P is progressively sequestered. The study found that Fe and Al crystallinities increased with soil age and the majority of soil P was in non-labile fractions. Organic components of NaHCO3 and NaOH extracts were found to be the P fractions that correlated best with the sesquioxides.

BOTANICAL STUDIES (2021)

Article Multidisciplinary Sciences

Structure and Diversity of Soil Bacterial Communities in Offshore Islands

Yu-Te Lin, Yu-Fei Lin, Isheng J. Tsai, Ed-Haun Chang, Shih-Hao Jien, Yen-Ju Lin, Chih-Yu Chiu

SCIENTIFIC REPORTS (2019)

Article Soil Science

Changes in bacterial community structure and carbon metabolism in sandy soil under the long-term application of chitin-rich organic material and attapulgite

He Zhang, Aurore Degre, Caroline De Clerck, Shuangshuang Li, Jinshan Lian, Yuanyuan Peng, Tao Sun, Lindan Luo, Yanan Yue, Guihua Li, Jianfeng Zhang

Summary: The continuous expansion of sandy soil poses a threat to crop security. The use of chitin-rich organic material and attapulgite as soil amendments can improve degraded soil by increasing nutrient content and enzyme activity and altering bacterial community structure. This study provides insights into the link between soil properties, bacterial community structure, and microbial carbon metabolism function.

APPLIED SOIL ECOLOGY (2024)

Article Soil Science

The addition of Glomalin-related soil protein and functional microbial consortium increased bound PAH residue degradation in soil

Xian Zhou, Yi Jiang, Ganghua Leng, Wanting Ling, Jian Wang

Summary: Bound Polycyclic Aromatic Hydrocarbons (PAHs) residues have significant impacts on soil pollution remediation. The addition of exogenous functional microbial consortium and glomalin-related soil protein (GRSP) can promote the degradation of bound PAH residues. This study fills the cognitive gap of GRSP in regulating the degradation of bound PAH residues in soil.

APPLIED SOIL ECOLOGY (2024)

Review Soil Science

Using biochar for the treatment of continuous cropping obstacle of herbal remedies: A review

Xinyu Zhao, Evrim Elcin, Lizhi He, Meththika Vithanage, Xiaokai Zhang, Jie Wang, Shuo Wang, Yun Deng, Nabeel Khan Niazi, Sabry M. Shaheen, Hailong Wang, Zhenyu Wang

Summary: The increase of cultivated varieties of Chinese herbal remedies, the expansion of cultivation area, and long-term monoculture cropping have led to aggravated problems of soil diseases, yield loss, and quality reduction. Biochar, as a carbon-rich material, has the potential to improve soil quality and alleviate continuous crop obstacles for Chinese herbal remedies.

APPLIED SOIL ECOLOGY (2024)

Editorial Material Soil Science

Towards integrative analysis of abiotic and biotic drivers of soil biodiversity

Melanie M. Pollierer, Anton Potapov, Andrey Zaitsev

APPLIED SOIL ECOLOGY (2024)

Article Soil Science

Linear models for describing relations between sensitive bacterial taxa and ecological risk from heavy metals in soils of coal mines in semi-arid region

Yajie Wang, Jiefeng Li, Yongfen Wei, Zhiyi Deng, Xiaodi Hao, Fusheng Li

Summary: This study investigates the impacts of heavy metal pollution caused by coal production on soil microbial ecology in the semi-arid region of Heilongjiang. The results reveal negative correlations between heavy metals and bacterial abundance and diversity. Twelve sensitive bacterial taxa and corresponding models were identified. Water content and total phosphorus were also found to play vital roles in regulating the bacterial community in the soil.

APPLIED SOIL ECOLOGY (2024)

Article Soil Science

Biological soil health with conventional and qPCR based indicators under conservation agriculture based rice-wheat cropping system in Indo-Gangetic Plain

Sujit Das, Sunanda Biswas, B. Ramakrishnan, T. K. Das, T. J. Purakayastha, B. H. Gawade, Priya Singh, Partha Sarathi Ghorai, Saloni Tripathy, Kanchan Sinha

Summary: This study assessed the impact of conservation agriculture on the biological soil health index in a rice-wheat system in the Indo-Gangetic Plains. The results showed that zero till direct seeded rice and crop residue incorporation could improve soil organic carbon, enzyme activities, and microbial population. Specifically, the inclusion of mungbean residues and sesbania brown manuring significantly increased the abundance of the nifH gene in the soil.

APPLIED SOIL ECOLOGY (2024)

Article Soil Science

Combined resource utilization of ash from biomass power generation and wheat straw biochar for soil remediation

Xingxiu Huang, Genxing Pan, Lianqing Li, Xuhui Zhang, Hailong Wang, Nanthi Bolan, Bhupinder Pal Singh, Chongjian Ma, Fuwei Liang, Yanjie Chen, Huashou Li

Summary: The study evaluated the effects of using a mixture of biomass waste ash and biochar on soil pH, heavy metal remediation, and plant growth. The results showed that the mixed use could ameliorate soil acidification, reduce absorption of cadmium and lead by plants, and promote plant growth. The special fertilizer prepared from the mixture can be used to promote crop growth and reduce environmental pollution.

APPLIED SOIL ECOLOGY (2024)

Article Soil Science

Drought-induced tree mortality in Scots pine mesocosms promotes changes in soil microbial communities and trophic groups

Astrid C. H. Jaeger, Martin Hartmann, Rafaela Feola Conz, Johan Six, Emily F. Solly

Summary: This study investigates the effects of tree mortality on soil microbial communities using a mesocosm experiment. The results show that tree death influenced soil microbial abundance and composition, with the potential to affect soil processes in forest ecosystems.

APPLIED SOIL ECOLOGY (2024)

Article Soil Science

Soil arthropod communities collected from agricultural soils influence wheat growth and modify phytohormone responses to aboveground herbivory in a microcosm experiment

Dane C. Elmquist, Subodh Adhikari, Ina Popova, Sanford D. Eigenbrode

Summary: This study investigated the effects of soil arthropod communities from cereal-based agroecosystems on wheat plant growth and above-belowground interactions. The results showed that wheat grown in soils with arthropod communities had better growth and defense against aphids, compared to wheat grown in soils without arthropod communities.

APPLIED SOIL ECOLOGY (2024)

Article Soil Science

Long-term organic fertilization reshapes the communities of bacteria and fungi and enhances the activities of C- and P-cycling enzymes in calcareous alluvial soil

Lei Wang, Jing Wang, Zhonghou Tang, Jidong Wang, Yongchun Zhang

Summary: This study found that the application of organic fertilizer enhances carbon and phosphorus cycling enzyme activities in soil, reshapes the soil microbial community structure, and regulates the interactions between these crucial indicators through soil organic carbon.

APPLIED SOIL ECOLOGY (2024)

Review Soil Science

The contribution of natural burials to soil ecosystem services: Review and emergent research questions

M. Pawlett, N. T. Girkin, L. Deeks, D. L. Evans, R. Sakrabani, P. Masters, K. Garnett, N. Marquez-Grant

Summary: The modern funeral industry faces environmental risks and challenges, and natural burial offers a more sustainable alternative. However, there is a lack of research comparing the risks and benefits of natural burial practices, including groundwater contamination and atmospheric emissions. More scientific research is needed to understand and regulate funeral options, as well as cultural incentives for natural burial.

APPLIED SOIL ECOLOGY (2024)

Article Soil Science

Higher colonization but lower diversity of root-associated arbuscular mycorrhizal fungi in the topsoil than in deep soil

Zhongcheng Wang, Jin Zhao, Dan Xiao, Meifeng Chen, Xunyang He

Summary: Root AMF colonization, diversity, and interactions vary with soil depth. Higher soil nutrient levels and root biomass promote colonization but suppress diversity and interactions in the upper soil layer compared to deeper layers.

APPLIED SOIL ECOLOGY (2024)

Article Soil Science

Herbivore dung deposition increases soil respiration through elevated substrate availability and microbial biomass

Zhiyang Zhang, Shiting Zhang, Riikka Rinnan

Summary: This study revealed the mechanisms behind the effects of dung deposition on soil heterotrophic respiration, providing insights for grassland management and carbon feedback prediction in grazed ecosystems.

APPLIED SOIL ECOLOGY (2024)

Article Soil Science

Cover crop functional types alter soil nematode community composition and structure in dryland crop-fallow rotations

Ismail Ibrahim Garba, Graham R. Stirling, A. Marcelle Stirling, Alwyn Williams

Summary: Integrating diverse cover crops into dryland crop-fallow rotations can enhance soil nutrient and water retention, suppress soil-borne pests, and improve soil health. The effects on soil nematode communities are modulated by the functional type and mixture composition of the cover crops. Selecting cover crops with appropriate traits can improve soil health through suppression of plant-parasitic nematodes, promotion of free-living nematodes, and enhancement of soil food web complexity.

APPLIED SOIL ECOLOGY (2024)

Article Soil Science

Temporal and spatial dynamics and functional metabolism of dark septate endophytes of Gymnocarpos przewalskii Maxim. in Northwest Desert, China

Min Li, Chao He, Miao Wei, Junmeng Long, Jingru Wang, Xinrong Yang, Kehan Wang, Xueli He

Summary: In extreme desert environments, black septate endophytes (DSE) can benefit the relict plant Gymnocarpos przewalskii by assisting it to survive and maintain ecosystem stability. The colonization of DSE in the roots of G. przewalskii varies significantly with seasons and sites, with soil properties being a major factor affecting the composition of DSE. Additionally, the functional metabolite composition of DSE strains varies greatly with different drought levels and isolates, indicating the potential complementarity between different strains in helping hosts cope with drought stress.

APPLIED SOIL ECOLOGY (2024)