Formal description of plant morphogenesis

Pollen Cell Wall Patterns Form from Modulated Phases

(2019) Asja Radja et al.   CELL

Synthetic silviculture

(2019) Miłosz Makowski et al.   ACM TRANSACTIONS ON GRAPHICS

A computational framework for cortical microtubule dynamics in realistically shaped plant cells

(2018) Bandan Chakrabortty et al.   PLoS Computational Biology

The self-organization of plant microtubules inside the cell volume yields their cortical localization, stable alignment, and sensitivity to external cues

(2018) Vincent Mirabet et al.   PLoS Computational Biology

Why plants make puzzle cells, and how their shape emerges

(2018) Aleksandra Sapala et al.   eLife

Cellular basis of growth in plants: geometry matters

(2018) Daniel Kierzkowski et al.   CURRENT OPINION IN PLANT BIOLOGY

A common developmental program can produce diverse leaf shapes

(2017) Adam Runions et al.   NEW PHYTOLOGIST

Auxin Signaling

(2017) Ottoline Leyser   PLANT PHYSIOLOGY

How selective severing by katanin promotes order in the plant cortical microtubule array

(2017) Eva E. Deinum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Topological analysis of multicellular complexity in the plant hypocotyl

(2017) Matthew DB Jackson et al.   eLife

Conformal growth of Arabidopsis leaves

(2016) Graeme Mitchison   JOURNAL OF THEORETICAL BIOLOGY

Development of a visco-elastoplastic contact force model and its parameter determination for apples

(2016) Elien Diels et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

A stochastic multicellular model identifies biological watermarks from disorders in self-organized patterns of phyllotaxis

(2016) Yassin Refahi et al.   eLife

An epidermis-driven mechanism positions and scales stem cell niches in plants

(2016) J. Gruel et al.   Science Advances

Discrete Element Method Simulations for Complex Granular Flows

(2015) Yu Guo et al.   Annual Review of Fluid Mechanics

Digital Single-Cell Analysis of Plant Organ Development Using 3DCellAtlas

(2015) Thomas D. Montenegro-Johnson et al.   PLANT CELL

Discrete Element Framework for Modelling Extracellular Matrix, Deformable Cells and Subcellular Components

(2015) Bruce S. Gardiner et al.   PLoS Computational Biology

A Computational Framework for 3D Mechanical Modeling of Plant Morphogenesis with Cellular Resolution

(2015) Frédéric Boudon et al.   PLoS Computational Biology

Three ancient hormonal cues co-ordinate shoot branching in a moss

(2015) Yoan Coudert et al.   eLife

Simulating tissue mechanics with agent-based models: concepts, perspectives and some novel results

(2015) P. Van Liedekerke et al.   Computational Particle Mechanics

Vertex Models of Epithelial Morphogenesis

(2014) Alexander G. Fletcher et al.   BIOPHYSICAL JOURNAL

Genetic Control of Plant Development by Overriding a Geometric Division Rule

(2014) Saiko Yoshida et al.   DEVELOPMENTAL CELL

Mechanical constraints imposed by 3D cellular geometry and arrangement modulate growth patterns in the Arabidopsis embryo

(2014) G. W. Bassel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A new model for cell division and migration with spontaneous topology changes

(2014) Anna Mkrtchyan et al.   Soft Matter

An intracellular partitioning-based framework for tissue cell polarity in plants and animals

(2013) K. Abley et al.   DEVELOPMENT

Vertex-element models for anisotropic growth of elongated plant organs

(2013) John A. Fozard et al.   Frontiers in Plant Science

Combined in silico/in vivo analysis of mechanisms providing for root apical meristem self-organization and maintenance

(2012) V. V. Mironova et al.   ANNALS OF BOTANY

Mechanical Stress Acts via Katanin to Amplify Differences in Growth Rate between Adjacent Cells in Arabidopsis

(2012) Magalie Uyttewaal et al.   CELL

Computational models of plant development and form

(2012) Przemyslaw Prusinkiewicz et al.   NEW PHYTOLOGIST

Cellular Force Microscopy for in Vivo Measurements of Plant Tissue Mechanics

(2012) A.-L. Routier-Kierzkowska et al.   PLANT PHYSIOLOGY

Unifying model of shoot gravitropism reveals proprioception as a central feature of posture control in plants

(2012) R. Bastien et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Generation of Leaf Shape Through Early Patterns of Growth and Tissue Polarity

(2012) E. E. Kuchen et al.   SCIENCE

Modelling complex biological systems using an agent-based approach

(2011) Mike Holcombe et al.   Integrative Biology

Universal rule for the symmetric division of plant cells

(2011) S. Besson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Generation of Diverse Biological Forms through Combinatorial Interactions between Tissue Polarity and Growth

(2011) Richard Kennaway et al.   PLoS Computational Biology

Tutorial on agent-based modelling and simulation

(2011) C M Macal et al.   Journal of Simulation

Lattice-Gas Cellular Automaton Models for Biology: From Fluids to Cells

(2010) Bastien Chopard et al.   ACTA BIOTHEORETICA

Emergence of tissue polarization from synergy of intracellular and extracellular auxin signaling

(2010) Krzysztof Wabnik et al.   Molecular Systems Biology

VirtualLeaf: An Open-Source Framework for Cell-Based Modeling of Plant Tissue Growth and Development

(2010) R. M. H. Merks et al.   PLANT PHYSIOLOGY

Self-organizing tree models for image synthesis

(2009) Wojciech Palubicki et al.   ACM TRANSACTIONS ON GRAPHICS

Rule-Based Simulation of Multi-Cellular Biological Systems—A Review of Modeling Techniques

(2009) Minki Hwang et al.   Cellular and Molecular Bioengineering

Prediction of traveling front behavior in a lattice-gas cellular automaton model for tumor invasion

(2009) H. Hatzikirou et al.   COMPUTERS & MATHEMATICS WITH APPLICATIONS

Shape and Dynamics of Tip-Growing Cells

(2009) Otger Campàs et al.   CURRENT BIOLOGY

Integration of transport-based models for phyllotaxis and midvein formation

(2009) E. M. Bayer et al.   GENES & DEVELOPMENT

Auxin transport-feedback models of patterning in plants

(2009) RICHARD S. SMITH et al.   PLANT CELL AND ENVIRONMENT

Control of bud activation by an auxin transport switch

(2009) P. Prusinkiewicz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Turning a plant tissue into a living cell froth through isotropic growth

(2009) F. Corson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Life, logic and information

(2008) Paul Nurse   NATURE

The tensor-based model for growth and cell divisions of the root apex. I. The significance of principal directions

(2008) Jerzy Nakielski   PLANTA

Developmental Patterning by Mechanical Signals in Arabidopsis

(2008) O. Hamant et al.   SCIENCE