Genomic selection in multi-environment plant breeding trials using a factor analytic linear mixed model

Climatic drivers of genotype–environment interactions in lodgepole pine based on multi-environment trial data and a factor analytic model of additive covariance

(2018) Nicholas K. Ukrainetz et al.   CANADIAN JOURNAL OF FOREST RESEARCH

Comparison of a one- and two-stage mixed model analysis of Australia’s National Variety Trial Southern Region wheat data

(2018) Beverley Gogel et al.   EUPHYTICA

Improving accuracies of genomic predictions for drought tolerance in maize by joint modeling of additive and dominance effects in multi-environment trials

(2018) Kaio Olímpio Das Graças Dias et al.   HEREDITY

Genomic Prediction Accounting for Genotype by Environment Interaction Offers an Effective Framework for Breeding Simultaneously for Adaptation to an Abiotic Stress and Performance Under Normal Cropping Conditions in Rice

(2018) Manel Ben Hassen et al.   G3-Genes Genomes Genetics

Plant breeding selection tools built on factor analytic mixed models for multi-environment trial data

(2018) Alison B. Smith et al.   EUPHYTICA

Resource allocation optimization with multi-trait genomic prediction for bread wheat (Triticum aestivum L.) baking quality

(2018) Bettina Lado et al.   THEORETICAL AND APPLIED GENETICS

Increased genomic prediction accuracy in wheat breeding using a large Australian panel

(2017) Adam Norman et al.   THEORETICAL AND APPLIED GENETICS

Genomic assisted selection for enhancing line breeding: merging genomic and phenotypic selection in winter wheat breeding programs with preliminary yield trials

(2016) Sebastian Michel et al.   THEORETICAL AND APPLIED GENETICS

Genomic selection in a commercial winter wheat population

(2016) Sang He et al.   THEORETICAL AND APPLIED GENETICS

Genomic Selection in Multi-environment Crop Trials

(2016) Helena Oakey et al.   G3-Genes Genomes Genetics

The importance of phenotypic data analysis for genomic prediction - a case study comparing different spatial models in rye

(2014) Angela-Maria Bernal-Vasquez et al.   BMC GENOMICS

On the Design of Field Experiments with Correlated Treatment Effects

(2014) David G. Butler et al.   JOURNAL OF AGRICULTURAL BIOLOGICAL AND ENVIRONMENTAL STATISTICS

Single Step, a general approach for genomic selection

(2014) Andres Legarra et al.   Livestock Science

Applying association mapping and genomic selection to the dissection of key traits in elite European wheat

(2014) Alison R. Bentley et al.   THEORETICAL AND APPLIED GENETICS

Factor analytic mixed models for the provision of grower information from national crop variety testing programs

(2014) Alison B. Smith et al.   THEORETICAL AND APPLIED GENETICS

Factor analytic and reduced animal models for the investigation of additive genotype-by-environment interaction in outcrossing plant species with application to a Pinus radiata breeding programme

(2014) Brian R. Cullis et al.   THEORETICAL AND APPLIED GENETICS

Genomic selection prediction accuracy in a perennial crop: case study of oil palm (Elaeis guineensis Jacq.)

(2014) David Cros et al.   THEORETICAL AND APPLIED GENETICS

Genomic selection in sugar beet breeding populations

(2013) Tobias Würschum et al.   BMC GENETICS

Dissecting the genetic architecture of frost tolerance in Central European winter wheat

(2013) Yusheng Zhao et al.   JOURNAL OF EXPERIMENTAL BOTANY

A reaction norm model for genomic selection using high-dimensional genomic and environmental data

(2013) Diego Jarquín et al.   THEORETICAL AND APPLIED GENETICS

Integrating environmental covariates and crop modeling into the genomic selection framework to predict genotype by environment interactions

(2013) Nicolas Heslot et al.   THEORETICAL AND APPLIED GENETICS

Whole-Genome Regression and Prediction Methods Applied to Plant and Animal Breeding

(2012) G. de los Campos et al.   GENETICS

Comparisons of single-stage and two-stage approaches to genomic selection

(2012) Torben Schulz-Streeck et al.   THEORETICAL AND APPLIED GENETICS

Using the genomic relationship matrix to predict the accuracy of genomic selection

(2011) M.E. Goddard et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

A mixed model QTL analysis for sugarcane multiple-harvest-location trial data

(2011) M. M. Pastina et al.   THEORETICAL AND APPLIED GENETICS

A COMPARISON OF ANALYSIS METHODS FOR LATE-STAGE VARIETY EVALUATION TRIALS

(2010) Sue J. Welham et al.   AUSTRALIAN & NEW ZEALAND JOURNAL OF STATISTICS

Analysis of yield and oil from a series of canola breeding trials. Part I. Fitting factor analytic mixed models with pedigree informationThis article is one of a selection of papers from the conference “Exploiting Genome-wide Association in Oilseed Brassicas: a model for genetic improvement of major OECD crops for sustainable farming”.

(2010) C. P. Beeck et al.   GENOME

Hot topic: A unified approach to utilize phenotypic, full pedigree, and genomic information for genetic evaluation of Holstein final score1

(2010) I. Aguilar et al.   JOURNAL OF DAIRY SCIENCE

Technical note: Derivation of equivalent computing algorithms for genomic predictions and reliabilities of animal merit

(2009) I. Strandén et al.   JOURNAL OF DAIRY SCIENCE

Invited review: Genomic selection in dairy cattle: Progress and challenges

(2009) B.J. Hayes et al.   JOURNAL OF DAIRY SCIENCE

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE