Shortcomings of Phylogenetic Studies on Recent Radiated Insular Groups: A Meta-Analysis Using Cabo Verde Biodiversity

Plastome Sequences Help to Resolve Deep-Level Relationships of Populus in the Family Salicaceae

(2019) Dan Zong et al.   Frontiers in Plant Science

The plastome sequence of Laurus azorica (Seub.) Franco, an endemic tree species of the Azores islands

(2019) Xi-Jian Liang et al.   Mitochondrial DNA Part B-Resources

Phylogeography of the Macaronesian Lettuce Species Lactuca watsoniana and L. palmensis (Asteraceae)

(2018) Elisabete F. Dias et al.   BIOCHEMICAL GENETICS

Colonization and diversification shape species-area relationships in three Macaronesian archipelagos

(2018) Jonathan P. Price et al.   JOURNAL OF BIOGEOGRAPHY

Global change impacts on large-scale biogeographic patterns of marine organisms on Atlantic oceanic islands

(2018) Sérgio P. Ávila et al.   MARINE POLLUTION BULLETIN

Using a new RAD-sequencing approach to study the evolution of Micromeria in the Canary islands

(2018) Manuel Curto et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

An expanded molecular phylogeny of Plumbaginaceae, with emphasis on Limonium (sea lavenders): Taxonomic implications and biogeographic considerations

(2018) Konstantina Koutroumpa et al.   Ecology and Evolution

Bioinformatics Protocols for Quickly Obtaining Large-Scale Data Sets for Phylogenetic Inferences

(2018) Hugo López-Fernández et al.   Interdisciplinary Sciences-Computational Life Sciences

What Is the Giant Wall Gecko Having for Dinner? Conservation Genetics for Guiding Reserve Management in Cabo Verde

(2018) Catarina Pinho et al.   Genes

StarBEAST2 Brings Faster Species Tree Inference and Accurate Estimates of Substitution Rates

(2017) Huw A. Ogilvie et al.   MOLECULAR BIOLOGY AND EVOLUTION

RADseq provides unprecedented insights into molecular ecology and evolutionary genetics: comment on Breaking RAD by Lowry et al . (2016)

(2017) Garrett J. McKinney et al.   Molecular Ecology Resources

Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations

(2017) Julian M. Catchen et al.   Molecular Ecology Resources

Molecular evidence in Diplotaxis (Brassicaceae) suggests a Quaternary origin of the Cape Verdean flora

(2017) Andreas Franzke et al.   PLANT SYSTEMATICS AND EVOLUTION

Island biogeography: Taking the long view of nature’s laboratories

(2017) Robert J. Whittaker et al.   SCIENCE

The geography and timing of genetic divergence in the lizard Phrynocephalus theobaldi on the Qinghai-Tibetan plateau

(2017) Yuanting Jin et al.   Scientific Reports

Phylogenetic relationships and phylogeography of relevant lineages within the complex Campanulaceae family in Macaronesia

(2017) Tiago Menezes et al.   Ecology and Evolution

RADseq dataset with 90% missing data fully resolves recent radiation of Petalidium (Acanthaceae) in the ultra-arid deserts of Namibia

(2017) Erin A. Tripp et al.   Ecology and Evolution

A Review of Bioinformatics Tools for Bio-Prospecting from Metagenomic Sequence Data

(2017) Despoina D. Roumpeka et al.   Frontiers in Genetics

Reference-based RADseq resolves robust relationships among closely related species of lichen-forming fungi using metagenomic DNA

(2017) Felix Grewe et al.   Scientific Reports

Multiplexed shotgun genotyping resolves species relationships within the North American genus Penstemon

(2016) Carolyn A. Wessinger et al.   AMERICAN JOURNAL OF BOTANY

A single origin of extreme matrotrophy in African mabuyine skinks

(2016) Margarita Metallinou et al.   Biology Letters

Assessing genotype-phenotype associations in three dorsal colour morphs in the meadow spittlebug Philaenus spumarius (L.) (Hemiptera: Aphrophoridae) using genomic and transcriptomic resources

(2016) Ana S. B. Rodrigues et al.   BMC GENETICS

Genomic Signatures of Historical Allopatry and Ecological Divergence in an Island Lizard

(2016) Richard P. Brown et al.   Genome Biology and Evolution

PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses

(2016) Robert Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Strategies for complete plastid genome sequencing

(2016) Alex D. Twyford et al.   Molecular Ecology Resources

Breaking RAD: an evaluation of the utility of restriction site-associated DNA sequencing for genome scans of adaptation

(2016) David B. Lowry et al.   Molecular Ecology Resources

Resolving the higher-order phylogenetic relationships of the circumtropical Mabuya group (Squamata: Scincidae): An out-of-Asia diversification

(2016) Benjamin R. Karin et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Combining phylogenomic and supermatrix approaches, and a time-calibrated phylogeny for squamate reptiles (lizards and snakes) based on 52 genes and 4162 species

(2016) Yuchi Zheng et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Patterns of diversification in islands: A comparative study across three gecko genera in the Socotra Archipelago

(2016) Joan Garcia-Porta et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Late Quaternary climate change shapes island biodiversity

(2016) Patrick Weigelt et al.   NATURE

Harnessing the power of RADseq for ecological and evolutionary genomics

(2016) Kimberly R. Andrews et al.   NATURE REVIEWS GENETICS

Persististrombus coronatus (Mollusca: Strombidae) in the lower Pliocene of Santa Maria Island (Azores, NE Atlantic): Paleoecology, paleoclimatology and paleobiogeographic implications

(2016) Sérgio P. Ávila et al.   PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY

Evolutionary and Biogeographic Insights on the Macaronesian Beta-Patellifolia Species (Amaranthaceae) from a Time-Scaled Molecular Phylogeny

(2016) Maria M. Romeiras et al.   PLoS One

Multiplexed-shotgun-genotyping data resolve phylogeny within a very recently derived insular lineage

(2015) Mark E. Mort et al.   AMERICAN JOURNAL OF BOTANY

Evaluating the performance of anchored hybrid enrichment at the tips of the tree of life: a phylogenetic analysis of Australian Eugongylus group scincid lizards

(2015) Matthew C Brandley et al.   BMC EVOLUTIONARY BIOLOGY

IUCN Red List assessment of the Cape Verde endemic flora: towards a global strategy for plant conservation in Macaronesia

(2015) Maria M. Romeiras et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Islands as model systems in ecology and evolution: prospects fifty years after MacArthur-Wilson

(2015) Ben H. Warren et al.   ECOLOGY LETTERS

Towards a glacial-sensitive model of island biogeography

(2015) José María Fernández-Palacios et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Sun skink landscape genomics: assessing the roles of micro-evolutionary processes in shaping genetic and phenotypic diversity across a heterogeneous and fragmented landscape

(2015) Anthony J. Barley et al.   MOLECULAR ECOLOGY

Exon capture phylogenomics: efficacy across scales of divergence

(2015) Jason G. Bragg et al.   Molecular Ecology Resources

GenBank

(2015) Karen Clark et al.   NUCLEIC ACIDS RESEARCH

Resolving Evolutionary Relationships in Closely Related Species with Whole-Genome Sequencing Data

(2015) Alexander Nater et al.   SYSTEMATIC BIOLOGY

Patterns of genetic diversity in three plant lineages endemic to the Cape Verde Islands

(2015) Maria M. Romeiras et al.   AoB Plants

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

The explosive radiation of Cheirolophus (Asteraceae, Cardueae) in Macaronesia

(2014) Daniel Vitales et al.   BMC EVOLUTIONARY BIOLOGY

Phylogeny of Zebrafish, a “Model Species,” within Danio, a “Model Genus”

(2014) Braedan M. McCluskey et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sequence capture using PCR-generated probes: a cost-effective method of targeted high-throughput sequencing for nonmodel organisms

(2014) Joshua V. Peñalba et al.   Molecular Ecology Resources

Insights into Himalayan biogeography from geckos: A molecular phylogeny of Cyrtodactylus (Squamata: Gekkonidae)

(2014) Ishan Agarwal et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylotranscriptomic analysis of the origin and early diversification of land plants

(2014) Norman J. Wickett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

DNA barcodes successfully identified Macaronesian Lotus (Leguminosae) species within early diverged lineages of Cape Verde and mainland Africa

(2014) D. I. Ojeda et al.   AoB Plants

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic and phylogeographic evidence for a Pleistocene disjunction between Campanula jacobaea (Cape Verde Islands) and C. balfourii (Socotra)

(2013) Marisa Alarcón et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Intraspecific lineages of the lizard Phrynocephalus putjatia from the Qinghai-Tibetan Plateau: Impact of physical events on divergence and discordance between morphology and molecular markers

(2013) Yuanting Jin et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Review of the distribution and conservation status of the terrestrial reptiles of the Cape Verde Islands

(2013) Raquel Vasconcelos et al.   ORYX

Phylogenetic Analysis and Molecular Dating Suggest That Hemidactylus anamallensis Is Not a Member of the Hemidactylus Radiation and Has an Ancient Late Cretaceous Origin

(2013) Rohini Bansal et al.   PLoS One

Out of Arabia: A Complex Biogeographic History of Multiple Vicariance and Dispersal Events in the Gecko Genus Hemidactylus (Reptilia: Gekkonidae)

(2013) Jiří Šmíd et al.   PLoS One

Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)

(2013) Deren A. R. Eaton et al.   SYSTEMATIC BIOLOGY

Genome sequencing and population genomics in non-model organisms

(2013) Hans Ellegren   TRENDS IN ECOLOGY & EVOLUTION

Evolutionary history of the genus Tarentola (Gekkota: Phyllodactylidae) from the Mediterranean Basin, estimated using multilocus sequence data

(2012) Catarina Rato et al.   BMC EVOLUTIONARY BIOLOGY

Phylogeny of the Asian Eutropis (Squamata: Scincidae) reveals an ‘into India’ endemic Indian radiation

(2012) Aniruddha Datta-Roy et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Molecular phylogenetics: principles and practice

(2012) Ziheng Yang et al.   NATURE REVIEWS GENETICS

Vertebrate time-tree elucidates the biogeographic pattern of a major biotic change around the K-T boundary in Madagascar

(2012) A. Crottini et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An integrative taxonomic revision of the Tarentola geckos (Squamata, Phyllodactylidae) of the Cape Verde Islands

(2012) RAQUEL VASCONCELOS et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

The Linnean shortfall in oceanic island biogeography: a case study in the Azores

(2011) Hanno Schaefer et al.   JOURNAL OF BIOGEOGRAPHY

The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments

(2011) Y. Kodama et al.   NUCLEIC ACIDS RESEARCH

Genetically Depauperate in the Continent but Rich in Oceanic Islands: Cistus monspeliensis (Cistaceae) in the Canary Islands

(2011) Mario Fernández-Mazuecos et al.   PLoS One

Best Practices for Justifying Fossil Calibrations

(2011) James F. Parham et al.   SYSTEMATIC BIOLOGY

Insight into an island radiation: the Tarentola geckos of the Cape Verde archipelago

(2010) Raquel Vasconcelos et al.   JOURNAL OF BIOGEOGRAPHY

Coming to America: multiple origins of New World geckos

(2010) T. GAMBLE et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Divergence times and colonization of the Canary Islands by Gallotia lizards

(2010) Siobhan C. Cox et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

An integrative taxonomic revision of the Cape Verdean skinks (Squamata, Scincidae)

(2010) Aurélien Miralles et al.   ZOOLOGICA SCRIPTA

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Evidence for a vicariant origin of Macaronesian–Eritreo/Arabian disjunctions in Campylanthus Roth (Plantaginaceae)

(2009) Mike Thiv et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The cancer genome

(2009) Michael R. Stratton et al.   NATURE

Accounting for Calibration Uncertainty in Phylogenetic Estimation of Evolutionary Divergence Times

(2009) Simon Y. W. Ho et al.   SYSTEMATIC BIOLOGY

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

Multilocus Phylogenetics of a Rapid Radiation in the Genus Thomomys (Rodentia: Geomyidae)

(2008) Natalia M. Belfiore et al.   SYSTEMATIC BIOLOGY

Systematics, biogeography and evolution of the endemicHemidactylusgeckos (Reptilia, Squamata, Gekkonidae) of the Cape Verde Islands: based on morphology and mitochondrial and nuclear DNA sequences

(2008) E. N. Arnold et al.   ZOOLOGICA SCRIPTA

Radiation, multiple dispersal and parallelism in the skinks, Chalcides and Sphenops (Squamata: Scincidae), with comments on Scincus and Scincopus and the age of the Sahara Desert

(2007) S. Carranza et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION