Early genome activation in Drosophila is extensive with an initial tendency for aborted transcripts and retained introns

A Developmental Program Truncates Long Transcripts to Temporally Regulate Cell Signaling

(2018) Jeremy E. Sandler et al.   DEVELOPMENTAL CELL

The kinetics of pre-mRNA splicing in the Drosophila genome and the influence of gene architecture

(2017) Athma A Pai et al.   eLife

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

Timing the Drosophila Mid-Blastula Transition: A Cell Cycle-Centered View

(2016) Kai Yuan et al.   TRENDS IN GENETICS

Bicoid gradient formation and function in the Drosophila pre-syncytial blastoderm

(2016) Zehra Ali-Murthy et al.   eLife

Zelda overcomes the high intrinsic nucleosome barrier at enhancers duringDrosophilazygotic genome activation

(2015) Yujia Sun et al.   GENOME RESEARCH

Zelda is differentially required for chromatin accessibility, transcription factor binding, and gene expression in the earlyDrosophilaembryo

(2015) Katharine N. Schulz et al.   GENOME RESEARCH

High-resolution analysis of gene activity during the Xenopus mid-blastula transition

(2014) Clara Collart et al.   DEVELOPMENT

Genome-scale functional characterization of Drosophila developmental enhancers in vivo

(2014) Evgeny Z. Kvon et al.   NATURE

The Earliest Transcribed Zygotic Genes Are Short, Newly Evolved, and Different across Species

(2014) Patricia Heyn et al.   Cell Reports

Widespread Changes in the Posttranscriptional Landscape at the Drosophila Oocyte-to-Embryo Transition

(2014) Iva Kronja et al.   Cell Reports

Requirement for highly efficient pre-mRNA splicing during Drosophila early embryonic development

(2014) Leonardo Gastón Guilgur et al.   eLife

Establishment of regions of genomic activity during the Drosophila maternal to zygotic transition

(2014) Xiao-Yong Li et al.   eLife

An Essential Role for Zygotic Expression in the Pre-Cellular Drosophila Embryo

(2013) Zehra Ali-Murthy et al.   PLoS Genetics

Noncanonical Compensation of Zygotic X Transcription in Early Drosophila melanogaster Development Revealed through Single-Embryo RNA-Seq

(2011) Susan E. Lott et al.   PLOS BIOLOGY

Temporal Coordination of Gene Networks by Zelda in the Early Drosophila Embryo

(2011) Chung-Yi Nien et al.   PLoS Genetics

Zelda Binding in the Early Drosophila melanogaster Embryo Marks Regions Subsequently Activated at the Maternal-to-Zygotic Transition

(2011) Melissa M. Harrison et al.   PLoS Genetics

Sex determination in Drosophila: The view from the top

(2010) Helen Salz et al.   FLY

Analysis and design of RNA sequencing experiments for identifying isoform regulation

(2010) Yarden Katz et al.   NATURE METHODS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

The maternal-to-zygotic transition: a play in two acts

(2009) W. Tadros et al.   DEVELOPMENT

The zinc-finger protein Zelda is a key activator of the early zygotic genome in Drosophila

(2008) Hsiao-Lan Liang et al.   NATURE

Exploring RNA transcription and turnover in vivo by using click chemistry

(2008) C. Y. Jao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcription Factors Bind Thousands of Active and Inactive Regions in the Drosophila Blastoderm

(2008) Xiao-yong Li et al.   PLOS BIOLOGY