4.7 Review

y The E. coli MinCDE system in the regulation of protein patterns and gradients

Journal

CELLULAR AND MOLECULAR LIFE SCIENCES
Volume 76, Issue 21, Pages 4245-4273

Publisher

SPRINGER BASEL AG
DOI: 10.1007/s00018-019-03218-x

Keywords

Reaction-diffusion mechanism; Spatiotemporal regulation; ParA-type ATPase; Geometry sensing; Reconstitution; FtsZ

Funding

  1. Max Planck Society
  2. DFG Collaborative Research Centre Spatiotemporal dynamics of bacterial cells [TRR 174/2017]
  3. DFG fellowship through the Graduate School of Quantitative Biosciences Munich (QBM)
  4. German Federal Ministry of Education and Research (BMBF)
  5. project A09 within the collaborative research program 1032 Nanoagents for the spatiotemporal control of molecular and cellular reactions of the German Research Foundation

Ask authors/readers for more resources

Molecular self-organziation, also regarded as pattern formation, is crucial for the correct distribution of cellular content. The processes leading to spatiotemporal patterns often involve a multitude of molecules interacting in complex networks, so that only very few cellular pattern-forming systems can be regarded as well understood. Due to its compositional simplicity, the Escherichia coli MinCDE system has, thus, become a paradigm for protein pattern formation. This biological reaction diffusion system spatiotemporally positions the division machinery in E. coli and is closely related to ParA-type ATPases involved in most aspects of spatiotemporal organization in bacteria. The ATPase MinD and the ATPase-activating protein MinE self-organize on the membrane as a reaction matrix. In vivo, these two proteins typically oscillate from pole-to-pole, while in vitro they can form a variety of distinct patterns. MinC is a passenger protein supposedly operating as a downstream cue of the system, coupling it to the division machinery. The MinCDE system has helped to extract not only the principles underlying intracellular patterns, but also how they are shaped by cellular boundaries. Moreover, it serves as a model to investigate how patterns can confer information through specific and non-specific interactions with other molecules. Here, we review how the three Min proteins self-organize to form patterns, their response to geometric boundaries, and how these patterns can in turn induce patterns of other molecules, focusing primarily on experimental approaches and developments.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.7
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Review Cell Biology

Hidden protein functions and what they may teach us

Petra Schwille, Bela P. Frohn

Summary: Bottom-up synthetic biology is a new research field that aims to construct living systems using minimal functional components. The challenges include identifying the necessary functions for a system to be considered alive and reconstituting these modules in vitro. Proteins, as candidates, may exhibit different functions outside the cellular context.

TRENDS IN CELL BIOLOGY (2022)

Article Chemistry, Multidisciplinary

Dendrimersome Synthetic Cells Harbor Cell Division Machinery of Bacteria

Anna M. Wagner, Hiromune Eto, Anton Joseph, Shunshi Kohyama, Tamas Haraszti, Ricardo A. Zamora, Mariia Vorobii, Marina Giannotti, Petra Schwille, Cesar Rodriguez-Emmenegger

Summary: This study demonstrates the reconstitution of a bacterial divisome in fully synthetic dendrimersomes, showing that the interaction between biological machinery and synthetic membranes can be tailored to reproduce its dynamic behavior. This breakthrough is important for engineering synthetic cells with biological elements from the bottom-up.

ADVANCED MATERIALS (2022)

Article Chemistry, Physical

3D printed protein-based robotic structures actuated by molecular motor assemblies

Haiyang Jia, Johannes Flommersfeld, Michael Heymann, Sven K. Vogel, Henri G. Franquelim, David B. Bruckner, Hiromune Eto, Chase P. Broedersz, Petra Schwille

Summary: This study presents a method of creating protein-based robotic structures using 3D printing technology, which can undergo micrometre-scale shape-morphing activity through the actuation of exoskeleton-like molecular motor assemblies. By utilizing an actomyosin cortex-like force production, low complexity motor arrangements can be achieved in a contractile meshwork that can be locally activated. This design allows for easy connection and assembly of micro-3D printed modules into larger structures, enabling mechanical work on a larger scale.

NATURE MATERIALS (2022)

Article Biochemical Research Methods

Reconstitution of a Reversible Membrane Switch via Prenylation by One-Pot Cell-Free Expression

Lei Kai, Sonal, Tamara Heermann, Petra Schwille

Summary: Reversible membrane targeting of proteins is crucial for cellular interaction networks, but challenging to reconstitute in vitro. The researchers introduced cell-free prenylated protein synthesis (CFpPS), enabling the synthesis and membrane targeting of proteins, providing a new method for designing synthetic cells.

ACS SYNTHETIC BIOLOGY (2023)

Article Chemistry, Multidisciplinary

Spatiotemporal Propagation of a Minimal Catalytic RNA Network in GUV Protocells by Temperature Cycling and Phase Separation

Benedikt Peter, Antoine Levrier, Petra Schwille

Summary: Compartmentalization is the key to many cellular processes. In this study, reversible RNA-based liquid-liquid phase separation was used to propagate an enzymatic reaction across lipid vesicles. Compartmentalization in the condensed RNA-rich phase accelerated the reaction, while content exchange between vesicles occurred during freeze-thawing.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2023)

Article Physics, Multidisciplinary

Mechanochemical feedback loop drives persistent motion of liposomes

Meifang Fu, Tom Burkart, Ivan Maryshev, Henri G. Franquelim, Adrian Merino-Salomon, Maria Reverte-Lopez, Erwin Frey, Petra Schwille

Summary: Through a mechanochemical feedback loop involving Min proteins of Escherichia coli, liposomes start to move, which may help to design motile artificial cells.

NATURE PHYSICS (2023)

Article Multidisciplinary Sciences

Insights into receptor structure and dynamics at the surface of living cells

Frederik Steiert, Peter Schultz, Siegfried Hoefinger, Thomas D. Mueller, Petra Schwille, Thomas Weidemann

Summary: Evaluating protein structures in living cells is challenging. This study investigates Interleukin-4 receptor alpha (IL-4R alpha) by incorporating the non-canonical amino acid BCNK through genetic code expansion. Bioorthogonal click labeling with tetrazine-conjugated dyes is performed. The study shows that click efficiency is linked to structural perturbations and dynamics of the protein in the native plasma membrane.

NATURE COMMUNICATIONS (2023)

Article Multidisciplinary Sciences

Periodic temperature changes drive the proliferation of self-replicating RNAs in vesicle populations

Elia Salibi, Benedikt Peter, Petra Schwille, Hannes Mutschler

Summary: The authors show that through freeze-thaw cycles, ribozymes can assemble in active forms and replicate in populations of membrane vesicles.

NATURE COMMUNICATIONS (2023)

Article Chemistry, Multidisciplinary

Inducing Lipid Domains in Membranes by Self-Assembly of DNA Origami

Nishu Kanwa, Svetozar Gavrilovic, Gereon A. Brueggenthies, Yusuf Qutbuddin, Petra Schwille

Summary: Self-assembly of biological molecules and structures is essential to life, and lipid self-assembly plays a crucial role in cellular organization and membrane interactions. Lipid domains, known as rafts, recruit specific proteins and are involved in sorting and trafficking of membrane components. However, the relationship between protein recruitment and lipid domain formation has not been explored in depth.

ADVANCED MATERIALS INTERFACES (2023)

Article Chemistry, Physical

Protein-Based Patterning to Spatially Functionalize Biomimetic Membranes

Maria Reverte-Lopez, Svetozar Gavrilovic, Adrian Merino-Salomon, Hiromune Eto, Ana Yaguee Relimpio, German Rivas, Petra Schwille

Summary: The bottom-up reconstitution of proteins can uncover hidden functions of proteins and in this study, it was shown that the bacterial Min proteins can transport diffusible cargo molecules directionally on membranes. The MinDE protein system was used to design 3D systems with surface patterning, demonstrating the ability to uniformly pattern bioactive molecules. Additionally, the MinDE system can form stationary patterns inside lipid vesicles, allowing for the targeting and clustering of higher-order protein structures. Min proteins are valuable tools for functionalizing artificial biosystems.

SMALL METHODS (2023)

Article Multidisciplinary Sciences

Biomolecular condensate drives polymerization and bundling of the bacterial tubulin FtsZ to regulate cell division

Beatrice Ramm, Dominik Schumacher, Andrea Harms, Tamara Heermann, Philipp Klos, Franziska Mueller, Petra Schwille, Lotte Sogaard-Andersen

Summary: The PomX/PomY/PomZ complex in the social bacterium Myxococcus xanthus directly positions and stimulates cytokinetic ring formation. The PomY forms liquid-like biomolecular condensates, while PomX self-assembles into filaments and enriches PomY through surface-assisted condensation. In vitro, PomY condensates selectively enrich FtsZ and nucleate its polymerization, suggesting a mechanism for spatiotemporally precise cell division.

NATURE COMMUNICATIONS (2023)

Article Multidisciplinary Sciences

Dual-color DNA-PAINT single-particle tracking enables extended studies of membrane protein interactions

Christian Niederauer, Chikim Nguyen, Miles Wang-Henderson, Johannes Stein, Sebastian Strauss, Alexander Cumberworth, Florian Stehr, Ralf Jungmann, Petra Schwille, Kristina A. Ganzinger

Summary: DNA-PAINT-SPT technique overcomes the limitations of fluorophore photobleaching and significantly improves observation times in in vitro SPT experiments. It is now extended to enable simultaneous dual-colour detection, allowing the quantification of protein dimerization and live cell membrane protein tracking. The technique demonstrates improved performance compared to single-dye SPT.

NATURE COMMUNICATIONS (2023)

Article Chemistry, Multidisciplinary

Elucidating the Mechanism of Freeze-Thaw Driven Content Mixing between Protocells

Benedikt Peter, Petra Schwille

Summary: Modern cells rely on evolved protein networks for essential functions, but primitive protocells required alternatives for genetic material dissemination. Temperature cycles on ancient earth were plausible driving forces for boosting protocellular complexity. Our study using confocal fluorescence microscopy demonstrates that freezing-thawing cycles promote content mixing between model protocells. We shed light on the exchange mechanism and show that destabilized membranes enable cargo molecule diffusion. This work reveals a simple scenario of inter-protocellular communication driven by freezing and melting of water.

CHEMSYSTEMSCHEM (2023)

Article Chemistry, Multidisciplinary

Nanoscale structural response of biomimetic cell membranes to controlled dehydration

Emilia Krok, Henri G. Franquelim, Madhurima Chattopadhyay, Hanna Orlikowska-Rzeznik, Petra Schwille, Lukasz Piatkowski

Summary: This study investigates the structural reorganization of lipid membranes under different hydration conditions. The findings show that reducing the hydration state of the membrane leads to increased lipid mixing between the liquid-disordered phase and the liquid-ordered phase. These changes are reversible upon membrane rehydration.

NANOSCALE (2023)

No Data Available