Protein-protein interaction prediction using a hybrid feature representation and a stacked generalization scheme

Co-complex protein membership evaluation using Maximum Entropy on GO ontology and InterPro annotation

(2018) Irina M Armean et al.   BIOINFORMATICS

An improved approach to infer protein-protein interaction based on a hierarchical vector space model

(2018) Jiongmin Zhang et al.   BMC BIOINFORMATICS

A New Feature Vector Based on Gene Ontology Terms for Protein-Protein Interaction Prediction

(2017) Sanghamitra Bandyopadhyay et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

DeepPPI: Boosting Prediction of Protein–Protein Interactions with Deep Neural Networks

(2017) Xiuquan Du et al.   Journal of Chemical Information and Modeling

TRI_tool: a web-tool for prediction of protein–protein interactions in human transcriptional regulation

(2016) Vladimir Perovic et al.   BIOINFORMATICS

Sequence-based prediction of protein-protein interactions using weighted sparse representation model combined with global encoding

(2016) Yu-An Huang et al.   BMC BIOINFORMATICS

Prediction of protein-protein interactions from amino acid sequences with ensemble extreme learning machines and principal component analysis

(2013) Zhu-Hong You et al.   BMC BIOINFORMATICS

Gene Ontology-driven inference of protein–protein interactions using inducers

(2011) Stefan R. Maetschke et al.   BIOINFORMATICS

Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM

(2011) Nurcan Tuncbag et al.   Nature Protocols

An improved method for scoring protein-protein interactions using semantic similarity within the Gene Ontology

(2010) Shobhit Jain et al.   BMC BIOINFORMATICS

Critical assessment of sequence-based protein-protein interaction prediction methods that do not require homologous protein sequences

(2009) Yungki Park   BMC BIOINFORMATICS

Semantic Similarity in Biomedical Ontologies

(2009) Catia Pesquita et al.   PLoS Computational Biology

Gene Ontology term overlap as a measure of gene functional similarity

(2008) Meeta Mistry et al.   BMC BIOINFORMATICS

Using support vector machine combined with auto covariance to predict protein–protein interactions from protein sequences

(2008) Yanzhi Guo et al.   NUCLEIC ACIDS RESEARCH

Human Protein Reference Database--2009 update

(2008) T. S. Keshava Prasad et al.   NUCLEIC ACIDS RESEARCH