Secretomic analyses of Ruminiclostridium papyrosolvens reveal its enzymatic basis for lignocellulose degradation

SignalP 5.0 improves signal peptide predictions using deep neural networks

(2019) José Juan Almagro Armenteros et al.   NATURE BIOTECHNOLOGY

Enhanced cellulosic ethanol production via consolidated bioprocessing by Clostridium thermocellum ATCC 31924☆

(2018) Nisha Singh et al.   BIORESOURCE TECHNOLOGY

Function analysis of 5′-UTR of the cellulosomal xyl-doc cluster in Clostridium papyrosolvens

(2018) Xia Zou et al.   Biotechnology for Biofuels

Quantitative multiplexed profiling of Penicillium funiculosum secretome grown on polymeric cellulase inducers and glucose

(2018) Funso Emmanuel Ogunmolu et al.   Journal of Proteomics

The hemicellulose-degrading enzyme system of the thermophilic bacterium Clostridium stercorarium: comparative characterisation and addition of new hemicellulolytic glycoside hydrolases

(2018) Jannis Broeker et al.   Biotechnology for Biofuels

Steered molecular dynamics simulations reveal the role of Ca2+ in regulating mechanostability of cellulose-binding proteins

(2018) Melissabye Gunnoo et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Biobutanol Production from Crystalline Cellulose through Consolidated Bioprocessing

(2018) Fengxue Xin et al.   TRENDS IN BIOTECHNOLOGY

Comparative secretomic analysis of lignocellulose degradation by Lentinula edodes grown on microcrystalline cellulose, lignosulfonate and glucose

(2017) Yingli Cai et al.   Journal of Proteomics

dbCAN-seq: a database of carbohydrate-active enzyme (CAZyme) sequence and annotation

(2017) Le Huang et al.   NUCLEIC ACIDS RESEARCH

Evaluation of secretome of highly efficient lignocellulolytic Penicillium sp. Dal 5 isolated from rhizosphere of conifers

(2016) Rohit Rai et al.   BIORESOURCE TECHNOLOGY

Cellulosomes: bacterial nanomachines for dismantling plant polysaccharides

(2016) Lior Artzi et al.   NATURE REVIEWS MICROBIOLOGY

Cellulosome stoichiometry in Clostridium cellulolyticum is regulated by selective RNA processing and stabilization

(2015) Chenggang Xu et al.   Nature Communications

Improvement of cellulose catabolism in Clostridium cellulolyticum by sporulation abolishment and carbon alleviation

(2014) Yongchao Li et al.   Biotechnology for Biofuels

Computational and Experimental Analysis of the Secretome of Methylococcus capsulatus (Bath)

(2014) Stine Indrelid et al.   PLoS One

Structure and regulation of the cellulose degradome in Clostridium cellulolyticum

(2013) Chenggang Xu et al.   Biotechnology for Biofuels

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

A Two-Component System (XydS/R) Controls the Expression of Genes Encoding CBM6-Containing Proteins in Response to Straw in Clostridium cellulolyticum

(2013) Hamza Celik et al.   PLoS One

Genome-wide analysis of Acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system

(2012) Bareket Dassa et al.   BMC GENOMICS

The microbial ecology of anaerobic cellulose degradation in municipal waste landfill sites: evidence of a role for fibrobacters

(2012) James E. McDonald et al.   ENVIRONMENTAL MICROBIOLOGY

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Factors influencing cellulosome activity in Consolidated Bioprocessing of cellulosic ethanol

(2010) Chenggang Xu et al.   BIORESOURCE TECHNOLOGY

Comparative genomics of the mesophilic cellulosome‐producingClostridium cellulovoransand its application to biofuel production via consolidated bioprocessing

(2010) Yutaka Tamaru et al.   ENVIRONMENTAL TECHNOLOGY

Sequencing of Multiple Clostridial Genomes Related to Biomass Conversion and Biofuel Production

(2010) C. L. Hemme et al.   JOURNAL OF BACTERIOLOGY

Transcriptional analysis of differential carbohydrate utilization by Clostridium acetobutylicum

(2010) M. D. Servinsky et al.   MICROBIOLOGY-SGM

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

The cellulosomes fromClostridium cellulolyticum

(2009) Imen Fendri et al.   FEBS Journal

Modulation of cellulosome composition inClostridium cellulolyticum: Adaptation to the polysaccharide environment revealed by proteomic and carbohydrate-active enzyme analyses

(2009) Jean-Charles Blouzard et al.   PROTEOMICS

From cellulosomes to cellulosomics

(2008) Edward A. Bayer et al.   CHEMICAL RECORD

Quantitative analysis of cellulose degradation and growth of cellulolytic bacteria in the rumen

(2008) James B. Russell et al.   FEMS MICROBIOLOGY ECOLOGY

Cellulosome gene cluster analysis for gauging the diversity of the ruminal cellulolytic bacteriumRuminococcus flavefaciens

(2008) Sadanari Jindou et al.   FEMS MICROBIOLOGY LETTERS

How biotech can transform biofuels

(2008) Lee R Lynd et al.   NATURE BIOTECHNOLOGY

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

Posterior Error Probabilities and False Discovery Rates: Two Sides of the Same Coin

(2007) Lukas Käll et al.   JOURNAL OF PROTEOME RESEARCH