Influence of the Intestinal Microbiota on Colonization Resistance to Salmonella and the Shedding Pattern of Naturally Exposed Pigs

Microbiome profiling of commercial pigs from farrow to finish

(2018) Brenda De Rodas et al.   JOURNAL OF ANIMAL SCIENCE

Early Salmonella Typhimurium infection in pigs disrupts Microbiome composition and functionality principally at the ileum mucosa

(2018) Héctor Argüello et al.   Scientific Reports

Reduction in fecal microbiota diversity and short-chain fatty acid producers in Methicillin-resistant Staphylococcus aureus infected individuals as revealed by PacBio single molecule, real-time sequencing technology

(2017) J. Zhao et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Evaluation of an Alternative Experimental Infection Method, Which Closely Mimics the Natural Route of Transmission of Monophasic Salmonella Typhimurium in Pigs

(2017) Helen Lynch et al.   Foodborne Pathogens and Disease

Gut microbiota: Role in pathogen colonization, immune responses, and inflammatory disease

(2017) Joseph M. Pickard et al.   IMMUNOLOGICAL REVIEWS

Commensal microbes provide first line defense againstListeria monocytogenesinfection

(2017) Simone Becattini et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Anaerobiospirillum succiniciproducens bacteraemia in the era of MALDI-TOF mass spectrometry

(2017) Daniel Garang Kuir et al.   PATHOLOGY

Vildagliptin increases butyrate-producing bacteria in the gut of diabetic rats

(2017) Qian Zhang et al.   PLoS One

Investigation of in-feed organic acids as a low cost strategy to combat Salmonella in grower pigs

(2017) H. Lynch et al.   PREVENTIVE VETERINARY MEDICINE

Effect of strategic administration of an encapsulated blend of formic acid, citric acid, and essential oils on Salmonella carriage, seroprevalence, and growth of finishing pigs

(2017) Kavita Walia et al.   PREVENTIVE VETERINARY MEDICINE

Neonatal acquisition of Clostridia species protects against colonization by bacterial pathogens

(2017) Yun-Gi Kim et al.   SCIENCE

Gut Microbiota Dysbiosis in Postweaning Piglets: Understanding the Keys to Health

(2017) Raphaële Gresse et al.   TRENDS IN MICROBIOLOGY

Salmonella in Swine: Microbiota Interactions

(2017) Hyeun Bum Kim et al.   Annual Review of Animal Biosciences

Depletion of Butyrate-Producing Clostridia from the Gut Microbiota Drives an Aerobic Luminal Expansion of Salmonella

(2016) Fabian Rivera-Chávez et al.   Cell Host & Microbe

Composition of human faecal microbiota in resistance to Campylobacter infection

(2016) C. Kampmann et al.   CLINICAL MICROBIOLOGY AND INFECTION

Effect of feeding sodium butyrate in the late finishing period on Salmonella carriage, seroprevalence, and growth of finishing pigs

(2016) Kavita Walia et al.   PREVENTIVE VETERINARY MEDICINE

Salmonella enterica Serovar Typhimurium Exploits Inflammation to Modify Swine Intestinal Microbiota

(2016) Rosanna Drumo et al.   Frontiers in Cellular and Infection Microbiology

Mucosal Prevalence and Interactions with the Epithelium Indicate Commensalism of Sutterella spp.

(2016) Kaisa Hiippala et al.   Frontiers in Microbiology

A reference gene catalogue of the pig gut microbiome

(2016) Liang Xiao et al.   Nature Microbiology

Gut microbiota composition and Clostridium difficile infection in hospitalized elderly individuals: a metagenomic study

(2016) Christian Milani et al.   Scientific Reports

Analysis of swine fecal microbiota at various growth stages

(2015) Jungman Kim et al.   ARCHIVES OF MICROBIOLOGY

Reappearance of Salmonella serovar Choleraesuis var. Kunzendorf in Danish pig herds

(2015) Karl Pedersen et al.   VETERINARY MICROBIOLOGY

The pig gut microbial diversity: Understanding the pig gut microbial ecology through the next generation high throughput sequencing

(2015) Hyeun Bum Kim et al.   VETERINARY MICROBIOLOGY

Early-life establishment of the swine gut microbiome and impact on host phenotypes

(2015) Núria Mach et al.   Environmental Microbiology Reports

Quantitative proteomics and bioinformatic analysis provide new insight into the dynamic response of porcine intestine to Salmonella Typhimurium

(2015) Melania Collado-Romero et al.   Frontiers in Cellular and Infection Microbiology

Intestinal microbial communities associated with acute enteric infections and disease recovery

(2015) Pallavi Singh et al.   Microbiome

The Dynamic Distribution of Porcine Microbiota across Different Ages and Gastrointestinal Tract Segments

(2015) Wenjing Zhao et al.   PLoS One

Development of gut immunoglobulin A production in piglet in response to innate and environmental factors

(2014) Benoît Levast et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Source Attribution of Human Salmonellosis: An Overview of Methods and Estimates

(2014) Sara M. Pires et al.   Foodborne Pathogens and Disease

Members of the human gut microbiota involved in recovery from Vibrio cholerae infection

(2014) Ansel Hsiao et al.   NATURE

Antibiotic-induced shifts in the mouse gut microbiome and metabolome increase susceptibility to Clostridium difficile infection

(2014) Casey M. Theriot et al.   Nature Communications

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

(2014) Jai Ram Rideout et al.   PeerJ

Effect of a DIVA vaccine with and without in-feed use of coated calcium-butyrate on transmission of Salmonella Typhimurium in pigs

(2013) Lotte De Ridder et al.   BMC Veterinary Research

Evaluation of protection conferred by a Salmonella Typhimurium inactivated vaccine in Salmonella-infected finishing pig farms

(2013) Hector Arguello et al.   COMPARATIVE IMMUNOLOGY MICROBIOLOGY AND INFECTIOUS DISEASES

Effect of the Addition of Organic Acids in Drinking Water or Feed During Part of the Finishing Period on the Prevalence of Salmonella in Finishing Pigs

(2013) Héctor Argüello et al.   Foodborne Pathogens and Disease

Profiling the gastrointestinal microbiota in response to Salmonella: Low versus high Salmonella shedding in the natural porcine host

(2013) Shawn M.D. Bearson et al.   INFECTION GENETICS AND EVOLUTION

Control of pathogens and pathobionts by the gut microbiota

(2013) Nobuhiko Kamada et al.   NATURE IMMUNOLOGY

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Prevalence, serotypes and resistance patterns of Salmonella in Danish pig production

(2013) Hector Arguello et al.   RESEARCH IN VETERINARY SCIENCE

Metagenomic profile of gut microbiota in children during cholera and recovery

(2013) Shirajum Monira et al.   Gut Pathogens

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Mitsuokella jalaludinii inhibits growth of Salmonella enterica serovar Typhimurium

(2012) Uri Y. Levine et al.   VETERINARY MICROBIOLOGY

Archaea as emerging organisms in complex human microbiomes

(2011) Bédis Dridi et al.   ANAEROBE

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Anaerobiospirillum succiniciproducens bacteraemia in a patient with acute lymphoblastic leukaemia

(2008) M. N. Fadzilah et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Non-typhoidal Salmonella infections in pigs: A closer look at epidemiology, pathogenesis and control

(2008) F. Boyen et al.   VETERINARY MICROBIOLOGY