A Bidirectional Label Propagation Based Computational Model for Potential Microbe-Disease Association Prediction

Network-based method for mining novel HPV infection related genes using random walk with restart algorithm

(2018) Liucun Zhu et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

Prediction of potential disease-associated microRNAs using structural perturbation method

(2018) Xiangxiang Zeng et al.   BIOINFORMATICS

BNPMDA: Bipartite Network Projection for MiRNA–Disease Association prediction

(2018) Xing Chen et al.   BIOINFORMATICS

Predicting miRNA–disease association based on inductive matrix completion

(2018) Xing Chen et al.   BIOINFORMATICS

A Novel Probability Model for LncRNA–Disease Association Prediction Based on the Naïve Bayesian Classifier

(2018) Jingwen Yu et al.   Genes

MDHGI: Matrix Decomposition and Heterogeneous Graph Inference for miRNA-disease association prediction

(2018) Xing Chen et al.   PLoS Computational Biology

Prediction of microbe–disease association from the integration of neighbor and graph with collaborative recommendation model

(2017) Yu-An Huang et al.   Journal of Translational Medicine

LRLSHMDA: Laplacian Regularized Least Squares for Human Microbe–Disease Association prediction

(2017) Fan Wang et al.   Scientific Reports

LRSSLMDA: Laplacian Regularized Sparse Subspace Learning for MiRNA-Disease Association prediction

(2017) Xing Chen et al.   PLoS Computational Biology

PBMDA: A novel and effective path-based computational model for miRNA-disease association prediction

(2017) Zhu-Hong You et al.   PLoS Computational Biology

PBHMDA: Path-Based Human Microbe-Disease Association Prediction

(2017) Zhi-An Huang et al.   Frontiers in Microbiology

A novel approach based on KATZ measure to predict associations of human microbiota with non-infectious diseases

(2016) Xing Chen et al.   BIOINFORMATICS

An analysis of human microbe–disease associations

(2016) Wei Ma et al.   BRIEFINGS IN BIOINFORMATICS

Long non-coding RNAs and complex diseases: from experimental results to computational models

(2016) Xing Chen et al.   BRIEFINGS IN BIOINFORMATICS

Editorial (Thematic Issue: Machine Learning Techniques for Protein Structure, Genomics Function Analysis and Disease Prediction)

(2016) Quan Zou   Current Proteomics

Airway Microbiota in Severe Asthma and Relationship to Asthma Severity and Phenotypes

(2016) Qingling Zhang et al.   PLoS One

Allergic Patients with Long-Term Asthma Display Low Levels of Bifidobacterium adolescentis

(2016) Arancha Hevia et al.   PLoS One

COPD and the microbiome

(2016) Manoj J. Mammen et al.   RESPIROLOGY

A microfluidics-based in vitro model of the gastrointestinal human–microbe interface

(2016) Pranjul Shah et al.   Nature Communications

Revised Estimates for the Number of Human and Bacteria Cells in the Body

(2016) Ron Sender et al.   PLOS BIOLOGY

NLLSS: Predicting Synergistic Drug Combinations Based on Semi-supervised Learning

(2016) Xing Chen et al.   PLoS Computational Biology

Drug–target interaction prediction: databases, web servers and computational models

(2015) Xing Chen et al.   BRIEFINGS IN BIOINFORMATICS

Integrative approaches for predicting microRNA function and prioritizing disease-related microRNA using biological interaction networks

(2015) Xiangxiang Zeng et al.   BRIEFINGS IN BIOINFORMATICS

Anti-Inflammatory Effects of Lactobacillus Rahmnosus and Bifidobacterium Breve on Cigarette Smoke Activated Human Macrophages

(2015) Esmaeil Mortaz et al.   PLoS One

Human Genetics Shape the Gut Microbiome

(2014) Julia K. Goodrich et al.   CELL

A Systematic Analysis of Biosynthetic Gene Clusters in the Human Microbiome Reveals a Common Family of Antibiotics

(2014) Mohamed S. Donia et al.   CELL

The subgingival microbiome of clinically healthy current and never smokers

(2014) Matthew R Mason et al.   ISME Journal

The Home Microbiome and Childhood Asthma

(2014) Christina E. Ciaccio et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Seasonal Variation in Human Gut Microbiome Composition

(2014) Emily R. Davenport et al.   PLoS One

Novel human lncRNA–disease association inference based on lncRNA expression profiles

(2013) Xing Chen et al.   BIOINFORMATICS

Gut microbiota in children with type 1 diabetes differs from that in healthy children: a case-control study

(2013) Mora Murri et al.   BMC Medicine

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Drug–target interaction prediction by random walk on the heterogeneous network

(2012) Xing Chen et al.   Molecular BioSystems

A framework for human microbiome research

(2012)   NATURE

Denaturing gradient gel electrophoresis of neonatal intestinal microbiota in relation to the development of asthma

(2011) Carl Vael et al.   BMC MICROBIOLOGY

Mode and place of delivery, gastrointestinal microbiota, and their influence on asthma and atopy

(2011) Frederika A. van Nimwegen et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Gut Microbiome Metagenomics Analysis Suggests a Functional Model for the Development of Autoimmunity for Type 1 Diabetes

(2011) Christopher T. Brown et al.   PLoS One

Meeting Report: The Terabase Metagenomics Workshop and the Vision of an Earth Microbiome Project

(2011) Jack A. Gilbert et al.   Standards in Genomic Sciences

Synbiotic intervention of Bifidobacterium lactis and resistant starch protects against colorectal cancer development in rats

(2009) R. K. Le Leu et al.   CARCINOGENESIS

Culture-independent analysis of the gut microbiota in colorectal cancer and polyposis

(2008) Pauline D. Scanlan et al.   ENVIRONMENTAL MICROBIOLOGY

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE

Predominant Role of Host Genetics in Controlling the Composition of Gut Microbiota

(2008) Zaruhi A. Khachatryan et al.   PLoS One

Early intestinal Bacteroides fragilis colonisation and development of asthma

(2008) Carl Vael et al.   BMC Pulmonary Medicine