Genome and Ontogenetic-Based Transcriptomic Analyses of the Flesh Fly, Sarcophaga bullata

The Toxicogenome of Hyalella azteca: A Model for Sediment Ecotoxicology and Evolutionary Toxicology

(2018) Helen C. Poynton et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Two isoforms of Pepck in Sarcophaga bullata and their distinct expression profiles through development, diapause, and in response to stresses of cold and starvation

(2018) Drew E. Spacht et al.   JOURNAL OF INSECT PHYSIOLOGY

Comprehensive transcriptome analysis of Sarcophaga peregrina, a forensically important fly species

(2018) Ji Yeon Kim et al.   Scientific Data

Changes in microRNA abundance may regulate diapause in the flesh fly, Sarcophaga bullata

(2017) Julie A. Reynolds et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

A blow to the fly — Lucilia cuprina draft genome and transcriptome to support advances in biology and biotechnology

(2016) Clare A. Anstead et al.   BIOTECHNOLOGY ADVANCES

Changes in histone acetylation as potential mediators of pupal diapause in the flesh fly, Sarcophaga bullata

(2016) J.A. Reynolds et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Unique features of a global human ectoparasite identified through sequencing of the bed bug genome

(2016) Joshua B. Benoit et al.   Nature Communications

The Spermatophore in Glossina morsitans morsitans: Insights into Male Contributions to Reproduction

(2016) Francesca Scolari et al.   Scientific Reports

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

The developmental transcriptome of the synanthropic fly Chrysomya megacephala and insights into olfactory proteins

(2015) Xiaoyun Wang et al.   BMC GENOMICS

The Expanding Genetic Toolbox of the Wasp Nasonia vitripennis and Its Relatives

(2015) Jeremy A. Lynch   GENETICS

A new approach for investigating venom function applied to venom calreticulin in a parasitoid wasp

(2015) Aisha L. Siebert et al.   TOXICON

Lucilia cuprina genome unlocks parasitic fly biology to underpin future interventions

(2015) Clare A. Anstead et al.   Nature Communications

Numerous Transitions of Sex Chromosomes in Diptera

(2015) Beatriz Vicoso et al.   PLOS BIOLOGY

The Expanding Genetic Toolbox of the Wasp Nasonia vitripennis and Its Relatives

(2015) Jeremy A. Lynch   GENETICS

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Structural and Genetic Investigation of the Egg and First-Instar Larva of an Egg-Laying Population of Blaesoxipha plinthopyga (Diptera: Sarcophagidae), a Species of Forensic Importance

(2014) Meaghan L. Pimsler et al.   JOURNAL OF MEDICAL ENTOMOLOGY

Parasitoid venom induces metabolic cascades in fly hosts

(2014) Mrinalini et al.   Metabolomics

Nasonia vitripennisvenom causes targeted gene expression changes in its fly host

(2014) Ellen O. Martinson et al.   MOLECULAR ECOLOGY

FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations

(2014) G. dos Santos et al.   NUCLEIC ACIDS RESEARCH

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

Genome Sequence of the Tsetse Fly (Glossina morsitans): Vector of African Trypanosomiasis

(2014) et al.   SCIENCE

Early changes in the pupal transcriptome of the flesh fly Sarcophagha crassipalpis to parasitization by the ectoparasitic wasp, Nasonia vitripennis

(2013) Ellen L. Danneels et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Transcriptional evidence for small RNA regulation of pupal diapause in the flesh fly, Sarcophaga bullata

(2013) Julie A. Reynolds et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Reversal of an ancient sex chromosome to an autosome in Drosophila

(2013) Beatriz Vicoso et al.   NATURE

REAPR: a universal tool for genome assembly evaluation

(2013) Martin Hunt et al.   GENOME BIOLOGY

A de novo transcriptome assembly of Lucilia sericata (Diptera: Calliphoridae) with predicted alternative splices, single nucleotide polymorphisms and transcript expression estimates

(2012) S-H. Sze et al.   INSECT MOLECULAR BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Combined transcriptomic and metabolomic approach uncovers molecular mechanisms of cold tolerance in a temperate flesh fly

(2012) Nicholas M. Teets et al.   PHYSIOLOGICAL GENOMICS

Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology

(2012) Adam C. English et al.   PLoS One

Phylogenetic relationships of flesh flies in the subfamily Sarcophaginae based on three mtDNA fragments (Diptera: Sarcophagidae)

(2012) TREVOR STAMPER et al.   SYSTEMATIC ENTOMOLOGY

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

The genetic basis of interspecies host preference differences in the model parasitoid Nasonia

(2010) C A Desjardins et al.   HEREDITY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Mechanisms of suspended animation are revealed by transcript profiling of diapause in the flesh fly

(2010) G. J. Ragland et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Female and male genetic contributions to post-mating immune defence in female Drosophila melanogaster

(2010) S. M. Short et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Assessing the gene space in draft genomes

(2008) Genis Parra et al.   NUCLEIC ACIDS RESEARCH