Metabolic Remodeling during Biofilm Development of Bacillus subtilis
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Title
Metabolic Remodeling during Biofilm Development of Bacillus subtilis
Authors
Keywords
-
Journal
mBio
Volume 10, Issue 3, Pages -
Publisher
American Society for Microbiology
Online
2019-05-20
DOI
10.1128/mbio.00623-19
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Note: Only part of the references are listed.- Improved Precursor Characterization for Data-Dependent Mass Spectrometry
- (2018) Alexander S. Hebert et al. ANALYTICAL CHEMISTRY
- Cyclic di-AMP Acts as an Extracellular Signal That Impacts Bacillus subtilis Biofilm Formation and Plant Attachment
- (2018) Loni Townsley et al. mBio
- Metabolic interactions between dynamic bacterial subpopulations
- (2018) Adam Z Rosenthal et al. eLife
- Ultra-High Pressure (>30,000 psi) Packing of Capillary Columns Enhancing Depth of Shotgun Proteomic Analyses
- (2018) Evgenia Shishkova et al. ANALYTICAL CHEMISTRY
- Regulation of the Synthesis and Secretion of the Iron Chelator Cyclodipeptide Pulcherriminic Acid in Bacillus licheniformis
- (2018) Dong Wang et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Iron Homeostasis in Bacillus subtilis Requires Siderophore Production and Biofilm Formation
- (2018) Adrien Rizzi et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Functional and evolutionary characterization of a secondary metabolite gene cluster in budding yeasts
- (2018) David J. Krause et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- SubtiWiki in 2018: from genes and proteins to functional network annotation of the model organism Bacillus subtilis
- (2017) Bingyao Zhu et al. NUCLEIC ACIDS RESEARCH
- Effect of deletion of 2,3-butanediol dehydrogenase gene (bdhA) on acetoin production of Bacillus subtilis
- (2017) Junjiao Zhang et al. PREPARATIVE BIOCHEMISTRY & BIOTECHNOLOGY
- Sequential induction of Fur-regulated genes in response to iron limitation inBacillus subtilis
- (2017) Hualiang Pi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Coupling between distant biofilms and emergence of nutrient time-sharing
- (2017) Jintao Liu et al. SCIENCE
- Editing of the Bacillus subtilis Genome by the CRISPR-Cas9 System
- (2016) Josef Altenbuchner APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The MarR-like protein PchR (YvmB) regulates expression of genes involved in pulcherriminic acid biosynthesis and in the initiation of sporulation in Bacillus subtilis
- (2016) Paola Randazzo et al. BMC MICROBIOLOGY
- Just in case it rains: building a hydrophobic biofilm the Bacillus subtilis way
- (2016) Sofia Arnaouteli et al. CURRENT OPINION IN MICROBIOLOGY
- MutS2 Promotes Homologous Recombination in Bacillus subtilis
- (2016) Peter E. Burby et al. JOURNAL OF BACTERIOLOGY
- Mitochondrial protein functions elucidated by multi-omic mass spectrometry profiling
- (2016) Jonathan A Stefely et al. NATURE BIOTECHNOLOGY
- Spatial structure, cooperation and competition in biofilms
- (2016) Carey D. Nadell et al. NATURE REVIEWS MICROBIOLOGY
- Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae
- (2016) Trey K. Sato et al. PLoS Genetics
- Second Messenger Signaling in Bacillus subtilis: Accumulation of Cyclic di-AMP Inhibits Biofilm Formation
- (2016) Jan Gundlach et al. Frontiers in Microbiology
- Now, More Than Ever, Proteomics Needs Better Chromatography
- (2016) Evgenia Shishkova et al. Cell Systems
- Phenolic Amides Are Potent Inhibitors ofDe NovoNucleotide Biosynthesis
- (2015) Tippapha Pisithkul et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The Matrix Reloaded: How Sensing the Extracellular Matrix Synchronizes Bacterial Communities
- (2015) Nitai Steinberg et al. JOURNAL OF BACTERIOLOGY
- Microbial Surface Colonization and Biofilm Development in Marine Environments
- (2015) Hongyue Dang et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- An experimentally supported model of the Bacillus subtilis global transcriptional regulatory network
- (2015) M. L. Arrieta-Ortiz et al. Molecular Systems Biology
- Metabolic co-dependence gives rise to collective oscillations within biofilms
- (2015) Jintao Liu et al. NATURE
- One-hour proteome analysis in yeast
- (2015) Alicia L Richards et al. Nature Protocols
- limma powers differential expression analyses for RNA-sequencing and microarray studies
- (2015) Matthew E. Ritchie et al. NUCLEIC ACIDS RESEARCH
- The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
- (2015) Ron Caspi et al. NUCLEIC ACIDS RESEARCH
- Expanded metabolic versatility of ubiquitous nitrite-oxidizing bacteria from the genusNitrospira
- (2015) Hanna Koch et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Acetic Acid Acts as a Volatile Signal To Stimulate Bacterial Biofilm Formation
- (2015) Yun Chen et al. mBio
- 13C pathway analysis of biofilm metabolism of Shewanella oneidensis MR-1
- (2015) Weihua Guo et al. RSC Advances
- Changes in the Acetylome and Succinylome of Bacillus subtilis in Response to Carbon Source
- (2015) Saori Kosono et al. PLoS One
- Isolation and Characterization of New Metschnikowia pulcherrima Strains as Producers of the Antimicrobial Pigment Pulcherrimin
- (2015) Sezai Türkel et al. ZEITSCHRIFT FUR NATURFORSCHUNG SECTION C-A JOURNAL OF BIOSCIENCES
- New Tools for Comparing Microscopy Images: Quantitative Analysis of Cell Types in Bacillus subtilis
- (2014) Jordi van Gestel et al. JOURNAL OF BACTERIOLOGY
- Biofilm-Related Infections: Bridging the Gap between Clinical Management and Fundamental Aspects of Recalcitrance toward Antibiotics
- (2014) D. Lebeaux et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ
- (2014) Jürgen Cox et al. MOLECULAR & CELLULAR PROTEOMICS
- Biofilm formation byBacillus subtilis: new insights into regulatory strategies and assembly mechanisms
- (2014) Lynne S. Cairns et al. MOLECULAR MICROBIOLOGY
- Coordination of microbial metabolism
- (2014) Victor Chubukov et al. NATURE REVIEWS MICROBIOLOGY
- Gene Ontology Consortium: going forward
- (2014) NUCLEIC ACIDS RESEARCH
- The role of extracellular DNA in the establishment, maintenance and perpetuation of bacterial biofilms
- (2013) Mira Okshevsky et al. CRITICAL REVIEWS IN MICROBIOLOGY
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- (2013) S. A. Leiman et al. JOURNAL OF BACTERIOLOGY
- The One Hour Yeast Proteome
- (2013) Alexander S. Hebert et al. MOLECULAR & CELLULAR PROTEOMICS
- Transcriptional regulation is insufficient to explain substrate-induced flux changes in Bacillus subtilis
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- (2013) P. B. Beauregard et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Fatty acids production from hydrogen and carbon dioxide by mixed culture in the membrane biofilm reactor
- (2013) Fang Zhang et al. WATER RESEARCH
- Software for Computing and Annotating Genomic Ranges
- (2013) Michael Lawrence et al. PLoS Computational Biology
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- (2012) Logan B. Christenson et al. BIOTECHNOLOGY AND BIOENGINEERING
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- (2012) Yun Chen et al. MOLECULAR MICROBIOLOGY
- Biofilms as living catalysts in continuous chemical syntheses
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- Single-cell Analysis of Bacillus subtilis Biofilms Using Fluorescence Microscopy and Flow Cytometry
- (2012) Juan C. Garcia-Betancur et al. Jove-Journal of Visualized Experiments
- Metabolome Remodeling during the Acidogenic-Solventogenic Transition in Clostridium acetobutylicum
- (2011) Daniel Amador-Noguez et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Role of Ferredoxin and Flavodoxins in Bacillus subtilis Fatty Acid Desaturation
- (2011) L. Chazarreta-Cifre et al. JOURNAL OF BACTERIOLOGY
- Regulation of Growth of the Mother Cell and Chromosome Replication during Sporulation of Bacillus subtilis
- (2011) P. Xenopoulos et al. JOURNAL OF BACTERIOLOGY
- The Spatial Architecture of Bacillus subtilis Biofilms Deciphered Using a Surface-Associated Model and In Situ Imaging
- (2011) Arnaud Bridier et al. PLoS One
- Metabolomic Analysis and Visualization Engine for LC−MS Data
- (2010) Eugene Melamud et al. ANALYTICAL CHEMISTRY
- Impact of the biofilm mode of growth on the inner membrane phospholipid composition and lipid domains in Pseudomonas aeruginosa
- (2010) Hayette Benamara et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- An update onPseudomonas aeruginosabiofilm formation, tolerance, and dispersal
- (2010) Morten Harmsen et al. FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY
- Pseudomonas aeruginosabiofilms in cystic fibrosis
- (2010) Niels Høiby et al. Future Microbiology
- Spatial Regulation of Histidine Kinases Governing Biofilm Formation in Bacillus subtilis
- (2010) A. L. McLoon et al. JOURNAL OF BACTERIOLOGY
- The biofilm matrix
- (2010) Hans-Curt Flemming et al. NATURE REVIEWS MICROBIOLOGY
- Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation
- (2010) Onuma Chumsakul et al. NUCLEIC ACIDS RESEARCH
- Microbiology of the Atmosphere-Rock Interface: How Biological Interactions and Physical Stresses Modulate a Sophisticated Microbial Ecosystem
- (2009) Anna A. Gorbushina et al. Annual Review of Microbiology
- DNA as an Adhesin: Bacillus cereus Requires Extracellular DNA To Form Biofilms
- (2009) S. Vilain et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Role ofBacillus subtilisBacB in the Synthesis of Bacilysin
- (2009) Malligarjunan Rajavel et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- A pivotal role for the response regulator DegU in controlling multicellular behaviour
- (2009) E. J. Murray et al. MICROBIOLOGY-SGM
- An intricate network of regulators controls biofilm formation and colonization byVibrio fischeri
- (2009) Karen L. Visick MOLECULAR MICROBIOLOGY
- Metabolic reconfiguration precedes transcriptional regulation in the antioxidant response
- (2009) Markus Ralser et al. NATURE BIOTECHNOLOGY
- Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli
- (2009) Bryson D Bennett et al. Nature Chemical Biology
- Complicated Catheter-Associated Urinary Tract Infections Due to Escherichia coli and Proteus mirabilis
- (2008) S. M. Jacobsen et al. CLINICAL MICROBIOLOGY REVIEWS
- Burkholderia cenocepacia Requires the RpoN Sigma Factor for Biofilm Formation and Intracellular Trafficking within Macrophages
- (2008) M. S. Saldias et al. INFECTION AND IMMUNITY
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- (2008) Wenyun Lu et al. JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES
- SlrR/SlrA controls the initiation of biofilm formation inBacillus subtilis
- (2008) Kazuo Kobayashi MOLECULAR MICROBIOLOGY
- MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
- (2008) Jürgen Cox et al. NATURE BIOTECHNOLOGY
- Absolute quantitation of intracellular metabolite concentrations by an isotope ratio-based approach
- (2008) Bryson D Bennett et al. Nature Protocols
- Root-Secreted Malic Acid Recruits Beneficial Soil Bacteria
- (2008) T. Rudrappa et al. PLANT PHYSIOLOGY
- Structurally diverse natural products that cause potassium leakage trigger multicellularity in Bacillus subtilis
- (2008) D. Lopez et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bacillus subtilis isolated from the human gastrointestinal tract
- (2008) Huynh A. Hong et al. RESEARCH IN MICROBIOLOGY
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