De novo design of tunable, pH-driven conformational changes

Effects of pH and Salt Concentration on Stability of a Protein G Variant Using Coarse-Grained Models

(2018) Vinícius Martins de Oliveira et al.   BIOPHYSICAL JOURNAL

SwitCCh: Metal-site design for controlling the assembly of a coiled-coil homodimer

(2018) Jana Aupič et al.   CHEMBIOCHEM

Localization of Protein Complex Bound Ligands by Surface-Induced Dissociation High-Resolution Mass Spectrometry

(2018) Florian Busch et al.   ANALYTICAL CHEMISTRY

Automated tilt series alignment and tomographic reconstruction in IMOD

(2017) David N. Mastronarde et al.   JOURNAL OF STRUCTURAL BIOLOGY

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy

(2017) Shawn Q Zheng et al.   NATURE METHODS

Global analysis of protein folding using massively parallel design, synthesis, and testing

(2017) Gabriel J. Rocklin et al.   SCIENCE

Low pH-induced conformational change and dimerization of sortilin triggers endocytosed ligand release

(2017) Nadia Leloup et al.   Nature Communications

The coming of age of de novo protein design

(2016) Po-Ssu Huang et al.   NATURE

De novo design of protein homo-oligomers with modular hydrogen-bond network-mediated specificity

(2016) S. E. Boyken et al.   SCIENCE

A De Novo Designed Coiled-Coil Peptide with a Reversible pH-Induced Oligomerization Switch

(2016) Robert Lizatović et al.   STRUCTURE

Computational Design and Experimental Characterization of Peptides Intended for pH-Dependent Membrane Insertion and Pore Formation

(2015) Yao Zhang et al.   ACS Chemical Biology

Mass Spectrometry of Protein Complexes: From Origins to Applications

(2015) Shahid Mehmood et al.   Annual Review of Physical Chemistry

CTFFIND4: Fast and accurate defocus estimation from electron micrographs

(2015) Alexis Rohou et al.   JOURNAL OF STRUCTURAL BIOLOGY

Discovery and Characterization of a Peptide That Enhances Endosomal Escape of Delivered Proteins in Vitro and in Vivo

(2015) Margie Li et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The endosomal-lysosomal system: from acidification and cargo sorting to neurodegeneration

(2015) Yong-Bo Hu et al.   Translational Neurodegeneration

Nanoparticles for gene delivery: therapeutic and toxic effects

(2014) Young Suk Choi et al.   Molecular & Cellular Toxicology

Computational design of a pH-sensitive IgG binding protein

(2014) E.-M. Strauch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High thermodynamic stability of parametrically designed helical bundles

(2014) Po-Ssu Huang et al.   SCIENCE

Receptor binding and pH stability — How influenza A virus hemagglutinin affects host-specific virus infection

(2013) Caroline M. Mair et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Accurate SAXS Profile Computation and its Assessment by Contrast Variation Experiments

(2013) Dina Schneidman-Duhovny et al.   BIOPHYSICAL JOURNAL

Implementation and performance of SIBYLS: a dual endstation small-angle X-ray scattering and macromolecular crystallography beamline at the Advanced Light Source

(2013) Scott Classen et al.   JOURNAL OF APPLIED CRYSTALLOGRAPHY

Coiled coil peptide-functionalized surfaces for reversible molecular binding

(2013) Caterina Minelli et al.   Soft Matter

Surface-Induced Dissociation of Ion Mobility-Separated Noncovalent Complexes in a Quadrupole/Time-of-Flight Mass Spectrometer

(2012) Mowei Zhou et al.   ANALYTICAL CHEMISTRY

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Design of pH Sensitive Binding Proteins from the Hyperthermophilic Sso7d Scaffold

(2012) Nimish Gera et al.   PLoS One

Quantifying Protein–Protein Interactions Within Noncovalent Complexes Using Electrospray Ionization Mass Spectrometry

(2011) Elisabetta Boeri Erba et al.   ANALYTICAL CHEMISTRY

Characterizing flexible and intrinsically unstructured biological macromolecules by SAS using the Porod-Debye law

(2011) Robert P. Rambo et al.   BIOPOLYMERS

A combinatorial histidine scanning library approach to engineer highly pH-dependent protein switches

(2011) Megan L. Murtaugh et al.   PROTEIN SCIENCE

XDS

(2010) Wolfgang Kabsch   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Secondary structure of cell-penetrating peptides controls membrane interaction and insertion

(2010) Emelía Eiríksdóttir et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Probing Designability via a Generalized Model of Helical Bundle Geometry

(2010) Gevorg Grigoryan et al.   JOURNAL OF MOLECULAR BIOLOGY

Antibody recycling by engineered pH-dependent antigen binding improves the duration of antigen neutralization

(2010) Tomoyuki Igawa et al.   NATURE BIOTECHNOLOGY

FoXS: a web server for rapid computation and fitting of SAXS profiles

(2010) D. Schneidman-Duhovny et al.   NUCLEIC ACIDS RESEARCH

pH-Triggered Disassembly in a Caged Protein Complex

(2009) Mercè Dalmau et al.   BIOMACROMOLECULES

Structures and Mechanisms of Viral Membrane Fusion Proteins: Multiple Variations on a Common Theme

(2008) Judith M. White et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY