A phylogenomic rodent tree reveals the repeated evolution of masseter architectures

The soft explosive model of placental mammal evolution

(2018) Matthew J. Phillips et al.   BMC EVOLUTIONARY BIOLOGY

Flightless scaly-tailed squirrels never learned how to fly: A reappraisal of Anomaluridae phylogeny

(2018) Pierre-Henri Fabre et al.   ZOOLOGICA SCRIPTA

Convergent evolution in the Euarchontoglires

(2018) Philip J. R. Morris et al.   Biology Letters

True Homoplasy of Retrotransposon Insertions in Primates

(2018) Liliya Doronina et al.   SYSTEMATIC BIOLOGY

Investigating Difficult Nodes in the Placental Mammal Tree with Expanded Taxon Sampling and Thousands of Ultraconserved Elements

(2017) Jacob A. Esselstyn et al.   Genome Biology and Evolution

Macrosystematics of eutherian mammals combining HTS data to expand taxon coverage

(2017) M. Feijoo et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genomic evidence reveals a radiation of placental mammals uninterrupted by the KPg boundary

(2017) Liang Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Why Do Phylogenomic Data Sets Yield Conflicting Trees? Data Type Influences the Avian Tree of Life more than Taxon Sampling

(2017) Sushma Reddy et al.   SYSTEMATIC BIOLOGY

The jaw is a second-class lever in Pedetes capensis (Rodentia: Pedetidae)

(2017) Philip G. Cox   PeerJ

Contentious relationships in phylogenomic studies can be driven by a handful of genes

(2017) Xing-Xing Shen et al.   Nature Ecology & Evolution

Five palaeobiological laws needed to understand the evolution of the living biota

(2017) Charles R. Marshall   Nature Ecology & Evolution

The Beaver’s Phylogenetic Lineage Illuminated by Retroposon Reads

(2017) Liliya Doronina et al.   Scientific Reports

Ancient phylogenetic divergence of the enigmatic African rodentZenkerellaand the origin of anomalurid gliding

(2016) Steven Heritage et al.   PeerJ

ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes

(2015) Siavash Mirarab et al.   BIOINFORMATICS

PHYLUCE is a software package for the analysis of conserved genomic loci

(2015) Brant C. Faircloth   BIOINFORMATICS

ASTRID: Accurate Species TRees from Internode Distances

(2015) Pranjal Vachaspati et al.   BMC GENOMICS

The Origin and Diversification of Birds

(2015) Stephen L. Brusatte et al.   CURRENT BIOLOGY

Masticatory Muscle Anatomy and Feeding Efficiency of the American Beaver, Castor canadensis (Rodentia, Castoridae)

(2015) Philip G. Cox et al.   JOURNAL OF MAMMALIAN EVOLUTION

Correction for Song et al., Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model

(2015)   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Corrected placement of Mus-Rattus fossil calibration forces precision in the molecular tree of rodents

(2015) Yuri Kimura et al.   Scientific Reports

ASTRAL: genome-scale coalescent-based species tree estimation

(2014) S. Mirarab et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

A newly recognized family from the Horn of Africa, the Heterocephalidae (Rodentia: Ctenohystrica)

(2014) Bruce D. Patterson et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Digital dissection of the masticatory muscles of the naked mole-rat,Heterocephalus glaber(Mammalia, Rodentia)

(2014) Philip G. Cox et al.   PeerJ

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

treePL: divergence time estimation using penalized likelihood for large phylogenies

(2012) Stephen A. Smith et al.   BIOINFORMATICS

A glimpse on the pattern of rodent diversification: a phylogenetic approach

(2012) Pierre-Henri Fabre et al.   BMC EVOLUTIONARY BIOLOGY

Convergent Evolution within an Adaptive Radiation of Cichlid Fishes

(2012) Moritz Muschick et al.   CURRENT BIOLOGY

Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture

(2012) N. Rohland et al.   GENOME RESEARCH

Functional Evolution of the Feeding System in Rodents

(2012) Philip G. Cox et al.   PLoS One

Molecular and Paleontological Evidence for a Post-Cretaceous Origin of Rodents

(2012) Shaoyuan Wu et al.   PLoS One

Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales

(2012) Brant C. Faircloth et al.   SYSTEMATIC BIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Middle Eocene rodents from Peruvian Amazonia reveal the pattern and timing of caviomorph origins and biogeography

(2011) P.-O. Antoine et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Impacts of the Cretaceous Terrestrial Revolution and KPg Extinction on Mammal Diversification

(2011) R. W. Meredith et al.   SCIENCE

Are Transposable Element Insertions Homoplasy Free?: An Examination Using the Avian Tree of Life

(2011) Kin-Lan Han et al.   SYSTEMATIC BIOLOGY

phytools: an R package for phylogenetic comparative biology (and other things)

(2011) Liam J. Revell   Methods in Ecology and Evolution

DendroPy: a Python library for phylogenetic computing

(2010) J. Sukumaran et al.   BIOINFORMATICS

Functional Anatomy of Incisal Biting in Aplodontia rufa and Sciuromorph Rodents – Part 1: Masticatory Muscles, Skull Shape and Digging

(2010) Robert E. Druzinsky   CELLS TISSUES ORGANS

Functional Anatomy of Incisal Biting in Aplodontia rufa and Sciuromorph Rodents – Part 2: Sciuromorphy Is Efficacious for Production of Force at the Incisors

(2010) Robert E. Druzinsky   CELLS TISSUES ORGANS

Masticatory muscle architecture in the gundi Ctenodactylus vali (Mammalia, Rodentia)

(2010) Lionel Hautier   MAMMALIA

Rodent Evolution: Back to the Root

(2010) Gennady Churakov et al.   MOLECULAR BIOLOGY AND EVOLUTION

Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades

(2009) Shani Blanga-Kanfi et al.   BMC EVOLUTIONARY BIOLOGY

Masticatory muscle architecture in the Laotian rock ratLaonastes aenigmamus(Mammalia, Rodentia): new insights into the evolution of hystricognathy

(2009) Lionel Hautier et al.   JOURNAL OF ANATOMY

Structure and direction of jaw adductor muscles as herbivorous adaptations in Neotoma mexicana (Muridae, Rodentia)

(2009) Kazuhiko Satoh et al.   ZOOMORPHOLOGY

Suprafamilial relationships among Rodentia and the phylogenetic effect of removing fast-evolving nucleotides in mitochondrial, exon and intron fragments

(2008) Claudine Montgelard et al.   BMC EVOLUTIONARY BIOLOGY

Calculating Bootstrap Probabilities of Phylogeny Using Multilocus Sequence Data

(2008) T.-K. Seo   MOLECULAR BIOLOGY AND EVOLUTION

Biting Performance in Teeth‐Digging African Mole‐Rats (Fukomys, Bathyergidae, Rodentia)

(2008) P. A. A. G. Van Daele et al.   PHYSIOLOGICAL AND BIOCHEMICAL ZOOLOGY

Evolution of the zygomasseteric construction in Rodentia, as revealed by a geometric morphometric analysis of the mandible ofGraphiurus(Rodentia, Gliridae)

(2008) LIONEL HAUTIER et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY