Why put up with immunity when there is resistance: an excursion into the population and evolutionary dynamics of restriction–modification and CRISPR-Cas

Immune loss as a driver of coexistence during host-phage coevolution

(2018) Jake L Weissman et al.   ISME Journal

Phage–host population dynamics promotes prophage acquisition in bacteria with innate immunity

(2018) Maroš Pleška et al.   Nature Ecology & Evolution

Leaky resistance and the conditions for the existence of lytic bacteriophage

(2018) Waqas N. Chaudhry et al.   PLOS BIOLOGY

Dynamics of adaptive immunity against phage in bacterial populations

(2017) Serena Bradde et al.   PLoS Computational Biology

Bacterial Autoimmunity Due to a Restriction-Modification System

(2016) Maroš Pleška et al.   CURRENT BIOLOGY

Evolutionary Ecology of Prokaryotic Immune Mechanisms

(2016) Stineke van Houte et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The diversity-generating benefits of a prokaryotic adaptive immune system

(2016) Stineke van Houte et al.   NATURE

Diversity of immune strategies explained by adaptation to pathogen statistics

(2016) Andreas Mayer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Parasite Exposure Drives Selective Evolution of Constitutive versus Inducible Defense

(2015) Edze R. Westra et al.   CURRENT BIOLOGY

CRISPR-Cas immunity in prokaryotes

(2015) Luciano A. Marraffini   NATURE

The evolution of bacterial resistance against bacteriophages in the horse chestnut phyllosphere is general across both space and time

(2015) Britt Koskella et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

CRISPR Immunity Drives Rapid Phage Genome Evolution in Streptococcus thermophilus

(2015) David Paez-Espino et al.   mBio

CRISPR-Induced Distributed Immunity in Microbial Populations

(2014) Lauren M. Childs et al.   PLoS One

Adaptation in bacterial CRISPR-Cas immunity can be driven by defective phages

(2014) Alexander P. Hynes et al.   Nature Communications

Phage-Mediated Selection on Microbiota of a Long-Lived Host

(2013) Britt Koskella   CURRENT BIOLOGY

Strong bias in the bacterial CRISPR elements that confer immunity to phage

(2013) David Paez-Espino et al.   Nature Communications

The Population and Evolutionary Dynamics of Phage and Bacteria with CRISPR–Mediated Immunity

(2013) Bruce R. Levin et al.   PLoS Genetics

MULTISCALE MODEL OF CRISPR-INDUCED COEVOLUTIONARY DYNAMICS: DIVERSIFICATION AT THE INTERFACE OF LAMARCK AND DARWIN

(2012) Lauren M. Childs et al.   EVOLUTION

Evolutionary Dynamics of Restriction Site Avoidance

(2012) Long Qian et al.   PHYSICAL REVIEW LETTERS

Repeatability and Contingency in the Evolution of a Key Innovation in Phage Lambda

(2012) J. R. Meyer et al.   SCIENCE

Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system

(2012) Kirill A. Datsenko et al.   Nature Communications

The Population and Evolutionary Dynamics of Vibrio cholerae and Its Bacteriophage: Conditions for Maintaining Phage-Limited Communities

(2011) Yan Wei et al.   AMERICAN NATURALIST

CRISPR-based immune systems of the Sulfolobales: complexity and diversity

(2011) Roger A. Garrett et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Bacteriophage resistance mechanisms

(2010) Simon J. Labrie et al.   NATURE REVIEWS MICROBIOLOGY

An experimental study of the population and evolutionary dynamics of Vibrio cholerae O1 and the bacteriophage JSF4

(2010) Y. Wei et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Multidrug-Resistant Enterococci Lack CRISPR-cas

(2010) K. L. Palmer et al.   mBio

Nasty Viruses, Costly Plasmids, Population Dynamics, and the Conditions for Establishing and Maintaining CRISPR-Mediated Adaptive Immunity in Bacteria

(2010) Bruce R. Levin   PLoS Genetics