Long-read sequencing reveals a 4.4 kb tandem repeat region in the mitogenome of Echinococcus granulosus (sensu stricto) genotype G1

Common Workflow Language (CWL)-based software pipeline for de novo genome assembly from long- and short-read data

(2019) Pasi K Korhonen et al.   GigaScience

Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium

(2019) Harald Oey et al.   PLoS Pathogens

Mitochondrial DNA replication in mammalian cells: overview of the pathway

(2018) Maria Falkenberg   Essays in Biochemistry

The benefits of analysing complete mitochondrial genomes: Deep insights into the phylogeny and population structure of Echinococcus granulosus sensu lato genotypes G6 and G7

(2018) Teivi Laurimäe et al.   INFECTION GENETICS AND EVOLUTION

Global phylogeography and genetic diversity of the zoonotic tapeworm Echinococcus granulosus sensu stricto genotype G1

(2018) Liina Kinkar et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Comparative mitogenomics supports synonymy of the genera Ligula and Digramma (Cestoda: Diphyllobothriidae)

(2018) Wen X. Li et al.   Parasites & Vectors

Genetic diversity and phylogeography of the elusive, but epidemiologically important Echinococcus granulosus sensu stricto genotype G3

(2018) Liina Kinkar et al.   PARASITOLOGY

Molecular phylogeny based on six nuclear genes suggests that Echinococcus granulosus sensu lato genotypes G6/G7 and G8/G10 can be regarded as two distinct species

(2018) Teivi Laurimäe et al.   PARASITOLOGY

Dot2dot: Accurate Whole-Genome Tandem Repeats Discovery

(2018) Loredana M Genovese et al.   BIOINFORMATICS

Characterization of the complete mitochondrial genome of Parabreviscolex niepini Xi et al., 2018 (Cestoda, Caryophyllidea)

(2018) Bing-Wen Xi et al.   ZooKeys

Whole-genome sequence of the oriental lung fluke Paragonimus westermani

(2018) Harald Oey et al.   GigaScience

New mitogenome and nuclear evidence on the phylogeny and taxonomy of the highly zoonotic tapeworm Echinococcus granulosus sensu stricto

(2017) Liina Kinkar et al.   INFECTION GENETICS AND EVOLUTION

Gene duplication and concerted evolution of mitochondrial DNA in crane species

(2017) Takuya Akiyama et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The complete mitochondrial DNA of three monozoic tapeworms in the Caryophyllidea: a mitogenomic perspective on the phylogeny of eucestodes

(2017) Wen X. Li et al.   Parasites & Vectors

Complete sequence and characterization of the mitochondrial genome of Diphyllobothrium stemmacephalum , the type species of genus Diphyllobothrium (Cestoda: Diphyllobothriidae), using next generation sequencing

(2017) Hiroshi Yamasaki et al.   PARASITOLOGY INTERNATIONAL

A novel zoonotic genotype related to Echinococcus granulosus sensu stricto from southern Ethiopia

(2016) Marion Wassermann et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Characterization of the complete mitochondrial genome of the cloacal tapeworm Cloacotaenia megalops (Cestoda: Hymenolepididae)

(2016) Aijiang Guo   Parasites & Vectors

Microdiversity of Echinococcus granulosus sensu stricto in Australia

(2016) C. A. ALVAREZ ROJAS et al.   PARASITOLOGY

The complete mitochondrial genome of Anoplocephala perfoliata, the first representative for the family Anoplocephalidae

(2015) Aijiang Guo   Parasites & Vectors

Response to Nakao et al. – is Echinococcus intermedius a valid species?

(2015) Alan J. Lymbery et al.   TRENDS IN PARASITOLOGY

Is Echinococcus intermedius a valid species?

(2015) Minoru Nakao et al.   TRENDS IN PARASITOLOGY

Echinococcus canadensis, E. borealis, and E. intermedius. What's in a name?

(2015) Alan J. Lymbery et al.   TRENDS IN PARASITOLOGY

A Rolling Circle Replication Mechanism Produces Multimeric Lariats of Mitochondrial DNA in Caenorhabditis elegans

(2015) Samantha C. Lewis et al.   PLoS Genetics

PacBio Sequencing and Its Applications

(2015) Anthony Rhoads et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Evolutionary Analysis of Mitogenomes from Parasitic and Free-Living Flatworms

(2015) Eduard Solà et al.   PLoS One

Echinococcus granulosus sensu lato genotypes infecting humans – review of current knowledge

(2013) Cristian A. Alvarez Rojas et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

The genomes of four tapeworm species reveal adaptations to parasitism

(2013) Isheng J. Tsai et al.   NATURE

Mitochondrial phylogeny of the genus Echinococcus (Cestoda: Taeniidae) with emphasis on relationships among Echinococcus canadensis genotypes

(2013) MINORU NAKAO et al.   PARASITOLOGY

Recombination and Evolution of Duplicate Control Regions in the Mitochondrial Genome of the Asian Big-Headed Turtle, Platysternon megacephalum

(2013) Chenfei Zheng et al.   PLoS One

Mitochondrial Transcription Terminator Family Members mTTF and mTerf5 Have Opposing Roles in Coordination of mtDNA Synthesis

(2013) Priit Jõers et al.   PLoS Genetics

Genetic variability of Echinococcus granulosus sensu stricto in Europe inferred by mitochondrial DNA sequences

(2012) Adriano Casulli et al.   INFECTION GENETICS AND EVOLUTION

Multiple independent origins of mitochondrial control region duplications in the order Psittaciformes

(2012) Erin E. Schirtzinger et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Genetic polymorphisms of Echinococcus granulosus sensu stricto in the Middle East

(2012) Tetsuya Yanagida et al.   PARASITOLOGY INTERNATIONAL

A Transcriptomic Analysis of Echinococcus granulosus Larval Stages: Implications for Parasite Biology and Host Adaptation

(2012) John Parkinson et al.   PLoS Neglected Tropical Diseases

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Complete mitochondrial genomes of Diplogonoporus balaenopterae and Diplogonoporus grandis (Cestoda: Diphyllobothriidae) and clarification of their taxonomic relationships

(2011) Hiroshi Yamasaki et al.   PARASITOLOGY INTERNATIONAL

Concerted evolution of duplicated mitochondrial control regions in three related seabird species

(2010) James A Morris-Pocock et al.   BMC EVOLUTIONARY BIOLOGY

The complete mitochondrial genomes of three cestode species of Taenia infecting animals and humans

(2010) Guo-Hua Liu et al.   MOLECULAR BIOLOGY REPORTS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

An integrated pipeline for next-generation sequencing and annotation of mitochondrial genomes

(2009) A. R. Jex et al.   NUCLEIC ACIDS RESEARCH

The mitochondrial genome of Gyrodactylus derjavinoides (Platyhelminthes: Monogenea) — A mitogenomic approach for Gyrodactylus species and strain identification

(2008) Tine Huyse et al.   GENE

Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species

(2008) C Gissi et al.   HEREDITY

First report of Echinococcus granulosus G8 in Eurasia and a reappraisal of the phylogenetic relationships of ‘genotypes’ G5-G10

(2008) E. MOKS et al.   PARASITOLOGY