High-density multi-fiber photometry for studying large-scale brain circuit dynamics

Towards circuit optogenetics

(2018) I-Wen Chen et al.   CURRENT OPINION IN NEUROBIOLOGY

Mesoscale connectomics

(2018) Hongkui Zeng   CURRENT OPINION IN NEUROBIOLOGY

Fiber-optic implant for simultaneous fluorescence-based calcium recordings and BOLD fMRI in mice

(2018) Felix Schlegel et al.   Nature Protocols

Genetic Dissection of Neural Circuits: A Decade of Progress

(2018) Liqun Luo et al.   NEURON

Reciprocal Circuits Linking the Prefrontal Cortex with Dorsal and Ventral Thalamic Nuclei

(2018) David P. Collins et al.   NEURON

Wireless optoelectronic photometers for monitoring neuronal dynamics in the deep brain

(2018) Luyao Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast neuronal imaging of dopamine dynamics with designed genetically encoded sensors

(2018) Tommaso Patriarchi et al.   SCIENCE

Silk Fibroin Films Facilitate Single-Step Targeted Expression of Optogenetic Proteins

(2018) Skyler L. Jackman et al.   Cell Reports

Behavioral Strategy Determines Frontal or Posterior Location of Short-Term Memory in Neocortex

(2018) Ariel Gilad et al.   NEURON

Subcellular probes for neurochemical recording from multiple brain sites

(2017) Helen N. Schwerdt et al.   LAB ON A CHIP

Fully integrated silicon probes for high-density recording of neural activity

(2017) James J. Jun et al.   NATURE

A calcium- and light-gated switch to induce gene expression in activated neurons

(2017) Dongmin Lee et al.   NATURE BIOTECHNOLOGY

Dynamic illumination of spatially restricted or large brain volumes via a single tapered optical fiber

(2017) Ferruccio Pisanello et al.   NATURE NEUROSCIENCE

Network neuroscience

(2017) Danielle S Bassett et al.   NATURE NEUROSCIENCE

Global Representations of Goal-Directed Behavior in Distinct Cell Types of Mouse Neocortex

(2017) William E. Allen et al.   NEURON

A Map of Anticipatory Activity in Mouse Motor Cortex

(2017) Tsai-Wen Chen et al.   NEURON

Deciphering the molecular mechanism responsible for GCaMP6m's Ca2+-dependent change in fluorescence

(2017) Lauren M. Barnett et al.   PLoS One

Mapping cortical mesoscopic networks of single spiking cortical or sub-cortical neurons

(2017) Dongsheng Xiao et al.   eLife

Cell-Type-Specific Optical Recording of Membrane Voltage Dynamics in Freely Moving Mice

(2016) Jesse D. Marshall et al.   CELL

In Vivo Evidence for a Lactate Gradient from Astrocytes to Neurons

(2016) Philipp Mächler et al.   Cell Metabolism

Functional Imaging of Dentate Granule Cells in the Adult Mouse Hippocampus

(2016) G.-A. Pilz et al.   JOURNAL OF NEUROSCIENCE

Wide field-of-view, multi-region, two-photon imaging of neuronal activity in the mammalian brain

(2016) Jeffrey N Stirman et al.   NATURE BIOTECHNOLOGY

Simultaneous fast measurement of circuit dynamics at multiple sites across the mammalian brain

(2016) Christina K Kim et al.   NATURE METHODS

A large field of view two-photon mesoscope with subcellular resolution for in vivo imaging

(2016) Nicholas James Sofroniew et al.   eLife

Long-range population dynamics of anatomically defined neocortical networks

(2016) Jerry L Chen et al.   eLife

Granger Causality Analysis in Neuroscience and Neuroimaging

(2015) A. K. Seth et al.   JOURNAL OF NEUROSCIENCE

Diverse coupling of neurons to populations in sensory cortex

(2015) Michael Okun et al.   NATURE

The Scalable Brain Atlas: Instant Web-Based Access to Public Brain Atlases and Related Content

(2015) Rembrandt Bakker et al.   NEUROINFORMATICS

Visualizing Whole-Brain Activity and Development at the Single-Cell Level Using Light-Sheet Microscopy

(2015) Philipp J. Keller et al.   NEURON

Monolithically Integrated μLEDs on Silicon Neural Probes for High-Resolution Optogenetic Studies in Behaving Animals

(2015) Fan Wu et al.   NEURON

Transgenic Mice for Intersectional Targeting of Neural Sensors and Effectors with High Specificity and Performance

(2015) Linda Madisen et al.   NEURON

Labeling of active neural circuits in vivo with designed calcium integrators

(2015) B. F. Fosque et al.   SCIENCE

Cortical information flow during flexible sensorimotor decisions

(2015) M. Siegel et al.   SCIENCE

Multi-channel fiber photometry for population neuronal activity recording

(2015) Qingchun Guo et al.   Biomedical Optics Express

Mapping Social Behavior-Induced Brain Activation at Cellular Resolution in the Mouse

(2015) Yongsoo Kim et al.   Cell Reports

Optical Neural Interfaces

(2014) Melissa R. Warden et al.   Annual Review of Biomedical Engineering

Natural Neural Projection Dynamics Underlying Social Behavior

(2014) Lisa A. Gunaydin et al.   CELL

A mesoscale connectome of the mouse brain

(2014) Seung Wook Oh et al.   NATURE

Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy

(2014) Robert Prevedel et al.   NATURE METHODS

Noninvasive optical inhibition with a red-shifted microbial rhodopsin

(2014) Amy S Chuong et al.   NATURE NEUROSCIENCE

Visualizing mammalian brain area interactions by dual-axis two-photon calcium imaging

(2014) Jérôme Lecoq et al.   NATURE NEUROSCIENCE

Behaviour-dependent recruitment of long-range projection neurons in somatosensory cortex

(2013) Jerry L. Chen et al.   NATURE

Concurrent activation of striatal direct and indirect pathways during action initiation

(2013) Guohong Cui et al.   NATURE

Ultrasensitive fluorescent proteins for imaging neuronal activity

(2013) Tsai-Wen Chen et al.   NATURE

Local domains of motor cortical activity revealed by fiber-optic calcium recordings in behaving nonhuman primates

(2013) H. Adelsberger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Simultaneous BOLD fMRI and fiber-optic calcium recording in rat neocortex

(2012) Kristina Schulz et al.   NATURE METHODS

In vivo Large-Scale Cortical Mapping Using Channelrhodopsin-2 Stimulation in Transgenic Mice Reveals Asymmetric and Reciprocal Relationships between Cortical Areas

(2012) Diana H. Lim et al.   Frontiers in Neural Circuits

Functional ultrasound imaging of the brain

(2011) Emilie Macé et al.   NATURE METHODS

Cell type–specific channelrhodopsin-2 transgenic mice for optogenetic dissection of neural circuitry function

(2011) Shengli Zhao et al.   NATURE METHODS

Miniaturized integration of a fluorescence microscope

(2011) Kunal K Ghosh et al.   NATURE METHODS

Optetrode: a multichannel readout for optogenetic control in freely moving mice

(2011) Polina Anikeeva et al.   NATURE NEUROSCIENCE

Dynamic reconfiguration of human brain networks during learning

(2011) D. S. Bassett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global and local fMRI signals driven by neurons defined optogenetically by type and wiring

(2010) Jin Hyung Lee et al.   NATURE

elastix: A Toolbox for Intensity-Based Medical Image Registration

(2009) S. Klein et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING