Epigenetic modulation of a hardwired 3D chromatin landscape in two naive states of pluripotency
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Epigenetic modulation of a hardwired 3D chromatin landscape in two naive states of pluripotency
Authors
Keywords
-
Journal
NATURE CELL BIOLOGY
Volume 21, Issue 5, Pages 568-578
Publisher
Springer Science and Business Media LLC
Online
2019-04-30
DOI
10.1038/s41556-019-0310-9
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Esrrb Unlocks Silenced Enhancers for Reprogramming to Naive Pluripotency
- (2018) Kenjiro Adachi et al. Cell Stem Cell
- Thrombopoietin signaling to chromatin elicits rapid and pervasive epigenome remodeling within poised chromatin architectures
- (2018) Federico Comoglio et al. GENOME RESEARCH
- Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming
- (2018) Ralph Stadhouders et al. NATURE GENETICS
- Transcription-coupled changes in nuclear mobility of mammalian cis-regulatory elements
- (2018) Bo Gu et al. SCIENCE
- Mediator and RNA polymerase II clusters associate in transcription-dependent condensates
- (2018) Won-Ki Cho et al. SCIENCE
- Contrasting epigenetic states of heterochromatin in the different types of mouse pluripotent stem cells
- (2018) Matteo Tosolini et al. Scientific Reports
- Long-Range Enhancer Interactions Are Prevalent in Mouse Embryonic Stem Cells and Are Reorganized upon Pluripotent State Transition
- (2018) Clara Lopes Novo et al. Cell Reports
- Combinatorial Smad2/3 Activities Downstream of Nodal Signaling Maintain Embryonic/Extra-Embryonic Cell Identities during Lineage Priming
- (2018) Anna D. Senft et al. Cell Reports
- Static and Dynamic DNA Loops form AP-1-Bound Activation Hubs during Macrophage Development
- (2017) Douglas H. Phanstiel et al. MOLECULAR CELL
- Prolonged Mek1/2 suppression impairs the developmental potential of embryonic stem cells
- (2017) Jiho Choi et al. NATURE
- The interplay of epigenetic marks during stem cell differentiation and development
- (2017) Yaser Atlasi et al. NATURE REVIEWS GENETICS
- Insulated Neighborhoods: Structural and Functional Units of Mammalian Gene Control
- (2016) Denes Hnisz et al. CELL
- Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution
- (2016) Hannah K. Long et al. CELL
- 3D Chromosome Regulatory Landscape of Human Pluripotent Cells
- (2016) Xiong Ji et al. Cell Stem Cell
- Local Genome Topology Can Exhibit an Incompletely Rewired 3D-Folding State during Somatic Cell Reprogramming
- (2016) Jonathan A. Beagan et al. Cell Stem Cell
- Cell-of-Origin-Specific 3D Genome Structure Acquired during Somatic Cell Reprogramming
- (2016) Peter Hugo Lodewijk Krijger et al. Cell Stem Cell
- Chromatin Domains: The Unit of Chromosome Organization
- (2016) Jesse R. Dixon et al. MOLECULAR CELL
- Enhancers as non-coding RNA transcription units: recent insights and future perspectives
- (2016) Wenbo Li et al. NATURE REVIEWS GENETICS
- Dynamic stem cell states: naive to primed pluripotency in rodents and humans
- (2016) Leehee Weinberger et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- 4C-ker: A Method to Reproducibly Identify Genome-Wide Interactions Captured by 4C-Seq Experiments
- (2016) Ramya Raviram et al. PLoS Computational Biology
- fluff: exploratory analysis and visualization of high-throughput sequencing data
- (2016) Georgios Georgiou et al. PeerJ
- FourCSeq: analysis of 4C sequencing data
- (2015) Felix A. Klein et al. BIOINFORMATICS
- Ground State Conditions Induce Rapid Reorganization of Core Pluripotency Factor Binding before Global Epigenetic Reprogramming
- (2015) Christina Galonska et al. Cell Stem Cell
- Dynamic Reorganization of Extremely Long-Range Promoter-Promoter Interactions between Two States of Pluripotency
- (2015) Onkar Joshi et al. Cell Stem Cell
- Chromatin architecture reorganization during stem cell differentiation
- (2015) Jesse R. Dixon et al. NATURE
- Competition between DNA methylation and transcription factors determines binding of NRF1
- (2015) Silvia Domcke et al. NATURE
- Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome
- (2015) Stefan Schoenfelder et al. NATURE GENETICS
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- Control of Cell Identity Genes Occurs in Insulated Neighborhoods in Mammalian Chromosomes
- (2014) Jill M. Dowen et al. CELL
- Reorganization of Enhancer Patterns in Transition from Naive to Primed Pluripotency
- (2014) Christa Buecker et al. Cell Stem Cell
- Epigenomic Comparison Reveals Activation of “Seed” Enhancers during Transition from Naive to Primed Pluripotency
- (2014) Daniel C. Factor et al. Cell Stem Cell
- Regulatory Principles of Pluripotency: From the Ground State Up
- (2014) Jamie A. Hackett et al. Cell Stem Cell
- Enhancer loops appear stable during development and are associated with paused polymerase
- (2014) Yad Ghavi-Helm et al. NATURE
- The ability of inner-cell-mass cells to self-renew as embryonic stem cells is acquired following epiblast specification
- (2014) Thorsten Boroviak et al. NATURE CELL BIOLOGY
- Defining an essential transcription factor program for naive pluripotency
- (2014) S.- J. Dunn et al. SCIENCE
- Latent Enhancers Activated by Stimulation in Differentiated Cells
- (2013) Renato Ostuni et al. CELL
- Klf4 Organizes Long-Range Chromosomal Interactions with the Oct4 Locus in Reprogramming and Pluripotency
- (2013) Zong Wei et al. Cell Stem Cell
- Long-Range Chromatin Contacts in Embryonic Stem Cells Reveal a Role for Pluripotency Factors and Polycomb Proteins in Genome Organization
- (2013) Matthew Denholtz et al. Cell Stem Cell
- Genome-wide Chromatin Interactions of the Nanog Locus in Pluripotency, Differentiation, and Reprogramming
- (2013) Effie Apostolou et al. Cell Stem Cell
- Whole-Genome Bisulfite Sequencing of Two Distinct Interconvertible DNA Methylomes of Mouse Embryonic Stem Cells
- (2013) Ehsan Habibi et al. Cell Stem Cell
- The pluripotent genome in three dimensions is shaped around pluripotency factors
- (2013) Elzo de Wit et al. NATURE
- A high-resolution map of the three-dimensional chromatin interactome in human cells
- (2013) Fulai Jin et al. NATURE
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- The Transcriptional and Epigenomic Foundations of Ground State Pluripotency
- (2012) Hendrik Marks et al. CELL
- Determining long-range chromatin interactions for selected genomic sites using 4C-seq technology: From fixation to computation
- (2012) Erik Splinter et al. METHODS
- ChromHMM: automating chromatin-state discovery and characterization
- (2012) Jason Ernst et al. NATURE METHODS
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- Differential expression analysis for sequence count data
- (2010) Simon Anders et al. GENOME BIOLOGY
- Transcriptome analysis by strand-specific sequencing of complementary DNA
- (2009) Dmitri Parkhomchuk et al. NUCLEIC ACIDS RESEARCH
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- The ground state of embryonic stem cell self-renewal
- (2008) Qi-Long Ying et al. NATURE
- BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals
- (2008) Ina Poser et al. NATURE METHODS
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now