Analyzing Secondary Structure Patterns in DNA Aptamers Identified via CompELS

Structured DNA Aptamer Interactions with Gold Nanoparticles

(2018) Peter A. Mirau et al.   LANGMUIR

Competition-Enhanced Ligand Selection to Identify DNA Aptamers

(2018) Maeling J. N. Tapp et al.   ACS Combinatorial Science

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

RAID v2.0: an updated resource of RNA-associated interactions across organisms

(2016) Ying Yi et al.   NUCLEIC ACIDS RESEARCH

New insights from cluster analysis methods for RNA secondary structure prediction

(2016) Emily Rogers et al.   Wiley Interdisciplinary Reviews-RNA

AptaTRACE Elucidates RNA Sequence-Structure Motifs from Selection Trends in HT-SELEX Experiments

(2016) Phuong Dao et al.   Cell Systems

SPARSE: quadratic time simultaneous alignment and folding of RNAs without sequence-based heuristics

(2015) Sebastian Will et al.   BIOINFORMATICS

APTANI: a computational tool to select aptamers through sequence-structure motif analysis of HT-SELEX data

(2015) J. Caroli et al.   BIOINFORMATICS

Evaluating the dual target binding capabilities of immobilized aptamers using flow cytometry

(2015) Adam B. Dunaway et al.   Biointerphases

Spectroscopic studies of nucleic acid additions during seed-mediated growth of gold nanoparticles

(2015) Maeling J.N. Tapp et al.   JOURNAL OF MATERIALS RESEARCH

Evaluating the dual target binding capabilities of immobilized aptamers using flow cytometry

(2015) Adam B. Dunaway et al.   Biointerphases

On the accuracy of statistical procedures in Microsoft Excel 2010

(2014) Guy Mélard   COMPUTATIONAL STATISTICS

The top 100 papers

(2014) Richard Van Noorden et al.   NATURE

Profiling small RNA reveals multimodal substructural signals in a Boltzmann ensemble

(2014) Emily Rogers et al.   NUCLEIC ACIDS RESEARCH

Resonant secondary light emission from plasmonic Au nanostructures at high electron temperatures created by pulsed-laser excitation

(2014) J. Huang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Determination of minimal sequence for binding of an aptamer. A comparison of truncation and hybridization inhibition methods

(2014) Thao T. Le et al.   RSC Advances

Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package

(2013) Carsten Kemena et al.   BIOINFORMATICS

The Quest for Shape Control: A History of Gold Nanorod Synthesis

(2013) Samuel E. Lohse et al.   CHEMISTRY OF MATERIALS

Identification of sequence-structure RNA binding motifs for SELEX-derived aptamers

(2012) J. Hoinka et al.   BIOINFORMATICS

Isolation and Optimization of Murine IL-10 Receptor Blocking Oligonucleotide Aptamers Using High-throughput Sequencing

(2012) Alexey Berezhnoy et al.   MOLECULAR THERAPY

CARNA--alignment of RNA structure ensembles

(2012) D. A. Sorescu et al.   NUCLEIC ACIDS RESEARCH

Probing High Affinity Sequences of DNA Aptamer against VEGF165

(2012) Harleen Kaur et al.   PLoS One

Tuned longitudinal surface plasmon resonance and third-order nonlinear optical properties of gold nanorods

(2011) Yushi Tsutsui et al.   NANOTECHNOLOGY

T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension

(2011) P. Di Tommaso et al.   NUCLEIC ACIDS RESEARCH

Rational Truncation of an RNA Aptamer to Prostate-Specific Membrane Antigen Using Computational Structural Modeling

(2011) William M. Rockey et al.   Nucleic Acid Therapeutics

Conservative secondary structure motif of streptavidin-binding aptamers generated by different laboratories

(2010) Tao Bing et al.   BIOORGANIC & MEDICINAL CHEMISTRY

Theophylline detection using an aptamer and DNA–gold nanoparticle conjugates

(2010) Jorge L. Chávez et al.   BIOSENSORS & BIOELECTRONICS

Screening and Improvement of an Anti-VEGF DNA Aptamer

(2010) Yoshihiko Nonaka et al.   MOLECULES

Determining the specificity of protein–DNA interactions

(2010) Gary D. Stormo et al.   NATURE REVIEWS GENETICS

Gold Nanorods: From Synthesis and Properties to Biological and Biomedical Applications

(2009) Xiaohua Huang et al.   ADVANCED MATERIALS

Functional Nucleic Acid Sensors

(2009) Juewen Liu et al.   CHEMICAL REVIEWS

Plasmon Coupling of Gold Nanorods at Short Distances and in Different Geometries

(2009) Alison M. Funston et al.   NANO LETTERS

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Label-Free Plasmonic Detection of Biomolecular Binding by a Single Gold Nanorod

(2008) Greg J. Nusz et al.   ANALYTICAL CHEMISTRY

A fast structural multiple alignment method for long RNA sequences

(2008) Yasuo Tabei et al.   BMC BIOINFORMATICS

RsiteDB: a database of protein binding pockets that interact with RNA nucleotide bases

(2008) A. Shulman-Peleg et al.   NUCLEIC ACIDS RESEARCH