A guinea fowl genome assembly provides new evidence on evolution following domestication and selection in galliformes

Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals

(2018) Aniek C. Bouwman et al.   NATURE GENETICS

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

(2017) Robert M Waterhouse et al.   MOLECULAR BIOLOGY AND EVOLUTION

Accounting for linkage disequilibrium in genome scans for selection without individual genotypes: The local score approach

(2017) María Inés Fariello et al.   MOLECULAR ECOLOGY

Uncovering Adaptation from Sequence Data: Lessons from Genome Resequencing of Four Cattle Breeds

(2016) Simon Boitard et al.   GENETICS

OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs

(2016) Evgeny M. Zdobnov et al.   NUCLEIC ACIDS RESEARCH

A New Chicken Genome Assembly Provides Insight into Avian Genome Structure

(2016) Wesley C. Warren et al.   G3-Genes Genomes Genetics

Uncovering Adaptation from Sequence Data: Lessons from Genome Resequencing of Four Cattle Breeds

(2016) Simon Boitard et al.   GENETICS

The taming of the neural crest: a developmental perspective on the origins of morphological covariation in domesticated mammals

(2016) Marcelo R. Sánchez-Villagra et al.   Royal Society Open Science

Improvement of regressive autism symptoms in a child withTMLHEdeficiency following carnitine supplementation

(2015) Mark N. Ziats et al.   AMERICAN JOURNAL OF MEDICAL GENETICS PART A

Mitochondrial DNA variation of Nigerian domestic helmeted guinea fowl

(2015) Adeniyi C. Adeola et al.   ANIMAL GENETICS

Split-alignment of genomes finds orthologies more accurately

(2015) Martin C Frith et al.   GENOME BIOLOGY

The Evolution of Animal Domestication

(2014) Greger Larson et al.   Annual Review of Ecology Evolution and Systematics

The "Domestication Syndrome" in Mammals: A Unified Explanation Based on Neural Crest Cell Behavior and Genetics

(2014) A. S. Wilkins et al.   GENETICS

Sequencing pools of individuals — mining genome-wide polymorphism data without big funding

(2014) Christian Schlötterer et al.   NATURE REVIEWS GENETICS

Endothelin Receptor B2 (EDNRB2) Is Responsible for the Tyrosinase-Independent Recessive White (mow) and Mottled (mo) Plumage Phenotypes in the Chicken

(2014) Keiji Kinoshita et al.   PLoS One

Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication

(2014) Michael J. Montague et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole-genome analyses resolve early branches in the tree of life of modern birds

(2014) E. D. Jarvis et al.   SCIENCE

Comparative genomics reveals insights into avian genome evolution and adaptation

(2014) G. Zhang et al.   SCIENCE

Conservation genomic analysis of domestic and wild pig populations from the Iberian Peninsula

(2013) Juan Herrero-Medrano et al.   BMC GENETICS

Detecting Signatures of Selection Through Haplotype Differentiation Among Hierarchically Structured Populations

(2013) M. I. Fariello et al.   GENETICS

Pool-hmm: a Python program for estimating the allele frequency spectrum and detecting selective sweeps from next generation sequencing of pooled samples

(2013) Simon Boitard et al.   Molecular Ecology Resources

The duck genome and transcriptome provide insight into an avian influenza virus reservoir species

(2013) Yinhua Huang et al.   NATURE GENETICS

RefSeq: an update on mammalian reference sequences

(2013) Kim D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

Genetic diversity and allelic richness in Spanish wild and domestic pig population estimated from microsatellite markers

(2013) J. Rodrigáñez et al.   SPANISH JOURNAL OF AGRICULTURAL RESEARCH

Development of 31 polymorphic microsatellite markers for guinea fowl (Numida meleagris) using next-generation sequencing technology

(2013) Princess K. Botchway et al.   Conservation Genetics Resources

Gene diversity, agroecological structure and introgression patterns among village chicken populations across North, West and Central Africa

(2012) Grégoire Leroy et al.   BMC GENETICS

Absence of TI-VAMP/Vamp7 Leads to Increased Anxiety in Mice

(2012) L. Danglot et al.   JOURNAL OF NEUROSCIENCE

Detecting Selective Sweeps from Pooled Next-Generation Sequencing Samples

(2012) S. Boitard et al.   MOLECULAR BIOLOGY AND EVOLUTION

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

(2011) R. Kofler et al.   BIOINFORMATICS

Genome-wide association studies of female reproduction in tropically adapted beef cattle1

(2011) R. J. Hawken et al.   JOURNAL OF ANIMAL SCIENCE

PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals

(2011) Robert Kofler et al.   PLoS One

Peace, health or fortune?

(2010) Vidogbèna Faustin et al.   ECOLOGICAL ECONOMICS

Detecting Selection in Population Trees: The Lewontin and Krakauer Test Extended

(2010) Maxime Bonhomme et al.   GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Genetic Diversity of Helmeted Guineafowl (Numida meleagris) Based on Microsatellite Analysis

(2010) Boniface B. Kayang et al.   JOURNAL OF POULTRY SCIENCE

Hundreds of variants clustered in genomic loci and biological pathways affect human height

(2010) Hana Lango Allen et al.   NATURE

Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis

(2010) Rami A. Dalloul et al.   PLOS BIOLOGY

integrOmics: an R package to unravel relationships between two omics datasets

(2009) Kim-Anh Lê Cao et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Genetic evidence from Indian red jungle fowl corroborates multiple domestication of modern day chicken

(2009) Sriramana Kanginakudru et al.   BMC EVOLUTIONARY BIOLOGY

Genetic analysis of local Vietnamese chickens provides evidence of gene flow from wild to domestic populations

(2009) C Berthouly et al.   BMC GENETICS

Detecting Selective Sweeps: A New Approach Based on Hidden Markov Models

(2009) S. Boitard et al.   GENETICS

Expression of pregnancy-associated plasma protein A2 during pregnancy in human and mouse

(2009) Joyce Wang et al.   JOURNAL OF ENDOCRINOLOGY

ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads

(2009) Iain MacCallum et al.   GENOME BIOLOGY

Using molecular markers and multivariate methods to study the genetic diversity of local European and Asian chicken breeds

(2008) C. Berthouly et al.   ANIMAL GENETICS