Integrating GWAS, QTL, mapping and RNA-seq to identify candidate genes for seed vigor in rice (Oryza sativa L.)

Mitochondrial small heat shock protein mediates seed germination via thermal sensing

(2019) Wei Ma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A heading date QTL, qHD7.2, from wild rice (Oryza rufipogon) delays flowering and shortens panicle length under long-day conditions

(2018) Li Jing et al.   Scientific Reports

Genome-Wide Association Study of Seed Dormancy and the Genomic Consequences of Improvement Footprints in Rice (Oryza sativa L.)

(2018) Qing Lu et al.   Frontiers in Plant Science

A Regulatory Module Controlling GA-Mediated Endosperm Cell Expansion Is Critical for Seed Germination in Arabidopsis

(2018) Rocío Sánchez-Montesino et al.   Molecular Plant

Natural variation reveals that OsSAP16 controls low-temperature germination in rice

(2017) Xiang Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Assessment of Five Chilling Tolerance Traits and GWAS Mapping in Rice Using the USDA Mini-Core Collection

(2017) Michael R. Schläppi et al.   Frontiers in Plant Science

Association Mapping Reveals Novel Genetic Loci Contributing to Flooding Tolerance during Germination in Indica Rice

(2017) Mengchen Zhang et al.   Frontiers in Plant Science

Genome wide association analysis of cold tolerance at germination in temperate japonica rice (Oryza sativa L.) varieties

(2017) Ester Sales et al.   PLoS One

Genome-wide association mapping revealed a diverse genetic basis of seed dormancy across subpopulations in rice (Oryza sativa L.)

(2016) Risper Auma Magwa et al.   BMC GENETICS

High-resolution QTL mapping for grain appearance traits and co-localization of chalkiness-associated differentially expressed candidate genes in rice

(2016) Likai Chen et al.   Rice

Association mapping of seed germination and seedling growth at three conditions in indica rice (Oryza sativa L.)

(2015) Jinping Cheng et al.   EUPHYTICA

Ectopic expression of a stress-inducible glycosyltransferase from saffron enhances salt and oxidative stress tolerance in Arabidopsis while alters anchor root formation

(2015) Oussama Ahrazem et al.   PLANT SCIENCE

Genetic Mapping of Anaerobic Germination-Associated QTLs Controlling Coleoptile Elongation in Rice

(2015) Sheng-Kai Hsu et al.   Rice

Dynamic Quantitative Trait Locus Analysis of Seed Vigor at Three Maturity Stages in Rice

(2014) Liangfeng Liu et al.   PLoS One

Combined linkage and association mapping reveals candidates for Scmv1, a major locus involved in resistance to sugarcane mosaic virus (SCMV) in maize

(2013) Yongfu Tao et al.   BMC PLANT BIOLOGY

Genome-wide Association Analysis of Ten Chilling Tolerance Indices at the Germination and Seedling Stages in Maize

(2013) Juan Huang et al.   Journal of Integrative Plant Biology

An Improved Genotyping by Sequencing (GBS) Approach Offering Increased Versatility and Efficiency of SNP Discovery and Genotyping

(2013) Humira Sonah et al.   PLoS One

Influence of exogenous IAA and GA on seed germination, vigor and their endogenous levels inCunninghamia lanceolata

(2013) Guangwu Zhao et al.   SCANDINAVIAN JOURNAL OF FOREST RESEARCH

Seed Germination and Vigor

(2012) Loïc Rajjou et al.   Annual Review of Plant Biology

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

Members of the gibberellin receptor gene family GID1 (GIBBERELLIN INSENSITIVE DWARF1) play distinct roles during Lepidium sativum and Arabidopsis thaliana seed germination

(2011) Antje Voegele et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-wide association study of leaf architecture in the maize nested association mapping population

(2011) Feng Tian et al.   NATURE GENETICS

Integration of Auxin and Salt Signals by the NAC Transcription Factor NTM2 during Seed Germination in Arabidopsis

(2011) J. Park et al.   PLANT PHYSIOLOGY

Gains in QTL Detection Using an Ultra-High Density SNP Map Based on Population Sequencing Relative to Traditional RFLP/SSR Markers

(2011) Huihui Yu et al.   PLoS One

Association genetics in crop improvement

(2010) J Antoni Rafalski   CURRENT OPINION IN PLANT BIOLOGY

Quantitative trait loci analysis for rice seed vigor during the germination stage

(2010) Zhou-fei Wang et al.   Journal of Zhejiang University-SCIENCE B

Joint linkage-linkage disequilibrium mapping is a powerful approach to detecting quantitative trait loci underlying drought tolerance in maize

(2010) Y. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing

(2010) W. Xie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Association mapping of local climate-sensitive quantitative trait loci in Arabidopsis thaliana

(2010) Y. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Defining Core Metabolic and Transcriptomic Responses to Oxygen Availability in Rice Embryos and Young Seedlings

(2009) R. Narsai et al.   PLANT PHYSIOLOGY

Smoke-water-induced changes of expression pattern in Grand Rapids lettuce achenes

(2009) Vilmos Soós et al.   SEED SCIENCE RESEARCH

Quantitative trait loci associated with lettuce seed germination under different temperature and light environments

(2008) Eiji Hayashi et al.   GENOME

Mapping Metabolic and Transcript Temporal Switches during Germination in Rice Highlights Specific Transcription Factors and the Role of RNA Instability in the Germination Process

(2008) K. A. Howell et al.   PLANT PHYSIOLOGY

Molecular identification of a major quantitative trait locus, qLTG3-1, controlling low-temperature germinability in rice

(2008) K. Fujino et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA