Genome‐wide association and genomic prediction for biomass yield in a genetically diverse Miscanthus sinensis germplasm panel phenotyped at five locations in Asia and North America

Biomass yield in a genetically diverse Miscanthus sinensis germplasm panel evaluated at five locations revealed individuals with exceptional potential

(2019) Lindsay V. Clark et al.   Global Change Biology Bioenergy

Genomic prediction accuracy for switchgrass traits related to bioenergy within differentiated populations

(2018) Jason D. Fiedler et al.   BMC PLANT BIOLOGY

Breeding progress and preparedness for mass-scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow, and poplar

(2018) John Clifton-Brown et al.   Global Change Biology Bioenergy

Winter hardiness of Miscanthus (I): Overwintering ability and yield of new Miscanthus × giganteus genotypes in Illinois and Arkansas

(2018) Hongxu Dong et al.   Global Change Biology Bioenergy

Crop genome-wide association study: a harvest of biological relevance

(2018) Hai-Jun Liu et al.   PLANT JOURNAL

Genetic mapping of biomass yield in three interconnected Miscanthus populations

(2017) Hongxu Dong et al.   Global Change Biology Bioenergy

Enhancing genomic prediction with genome-wide association studies in multiparental maize populations

(2017) Y Bian et al.   HEREDITY

Genetic relationships between spring emergence, canopy phenology, and biomass yield increase the accuracy of genomic prediction in Miscanthus

(2017) Christopher L Davey et al.   JOURNAL OF EXPERIMENTAL BOTANY

Population structure correction for genomic selection through eigenvector covariates

(2017) Camila Ferreira Azevedo et al.   Crop Breeding and Applied Biotechnology

Ecological characteristics andin situgenetic associations for yield-component traits of wildMiscanthusfrom eastern Russia

(2016) Lindsay V. Clark et al.   ANNALS OF BOTANY

Genome-wide prediction models that incorporate de novo GWAS are a powerful new tool for tropical rice improvement

(2016) J E Spindel et al.   HEREDITY

Marker-Trait Association for Biomass Yield of Potential Bio-fuel Feedstock Miscanthus sinensis from Southwest China

(2016) Gang Nie et al.   Frontiers in Plant Science

Characterizing a Germplasm Collection for Yield, Yield Components, and Genotype × Environment Interactions

(2015) Christopher M. Kaiser et al.   CROP SCIENCE

Genetic structure ofMiscanthus sinensisandMiscanthus sacchariflorusin Japan indicates a gradient of bidirectional but asymmetric introgression

(2015) Lindsay V. Clark et al.   JOURNAL OF EXPERIMENTAL BOTANY

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Genomic Selection for Predicting Head Blight Resistance in a Wheat Breeding Program

(2015) Marcio P. Arruda et al.   Plant Genome

A footprint of past climate change on the diversity and population structure of Miscanthus sinensis

(2014) Lindsay V. Clark et al.   ANNALS OF BOTANY

A Review on Miscanthus Biomass Production and Composition for Bioenergy Use: Genotypic and Environmental Variability and Implications for Breeding

(2014) Stéphanie Arnoult et al.   BioEnergy Research

Mapping the genome ofMiscanthus sinensisfor QTL associated with biomass productivity

(2014) Justin M. Gifford et al.   Global Change Biology Bioenergy

A Foundation for Provitamin A Biofortification of Maize: Genome-Wide Association and Genomic Prediction Models of Carotenoid Levels

(2014) Brenda F. Owens et al.   GENETICS

Accelerating the Switchgrass (Panicum virgatum L.) Breeding Cycle Using Genomic Selection Approaches

(2014) Alexander E. Lipka et al.   PLoS One

The impact of population structure on genomic prediction in stratified populations

(2014) Zhigang Guo et al.   THEORETICAL AND APPLIED GENETICS

Genetics of Tillering in Rice and Barley

(2014) Ahmed Hussien et al.   Plant Genome

Genetic variation inMiscanthus × giganteusand the importance of estimating genetic distance thresholds for differentiating clones

(2013) Katarzyna Głowacka et al.   Global Change Biology Bioenergy

Genomic prediction in CIMMYT maize and wheat breeding programs

(2013) J Crossa et al.   HEREDITY

Genome-wide association studies and prediction of 17 traits related to phenology, biomass and cell wall composition in the energy grassMiscanthus sinensis

(2013) Gancho T. Slavov et al.   NEW PHYTOLOGIST

Genetic Diversity and Population Structure of Miscanthus sinensis Germplasm in China

(2013) Hua Zhao et al.   PLoS One

Switchgrass Genomic Diversity, Ploidy, and Evolution: Novel Insights from a Network-Based SNP Discovery Protocol

(2013) Fei Lu et al.   PLoS Genetics

GAPIT: genome association and prediction integrated tool

(2012) Alexander E. Lipka et al.   BIOINFORMATICS

Accuracy of Genomic Selection Methods in a Standard Data Set of Loblolly Pine (Pinus taeda L.)

(2012) M. F. R. Resende et al.   GENETICS

Genomic and metabolic prediction of complex heterotic traits in hybrid maize

(2012) Christian Riedelsheimer et al.   NATURE GENETICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Genomic Selection in Wheat Breeding using Genotyping-by-Sequencing

(2012) Jesse Poland et al.   Plant Genome

A review of the genetic study of the energy crop Miscanthus

(2011) Katarzyna Głowacka   BIOMASS & BIOENERGY

Variability and adaptability of Miscanthus species evaluated for energy crop domestication

(2011) JUAN YAN et al.   Global Change Biology Bioenergy

Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP

(2011) Jeffrey B. Endelman   Plant Genome

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

Simultaneously accounting for population structure, genotype by environment interaction, and spatial variation in marker–trait associations in sugarcaneThis article is one of a selection of papers from the conference “Exploiting Genome-wide Association in Oilseed Brassicas: a model for genetic improvement of major OECD crops for sustainable farming”.

(2010) Xianming Wei et al.   GENOME

Mixed linear model approach adapted for genome-wide association studies

(2010) Zhiwu Zhang et al.   NATURE GENETICS

The WUS homeobox-containing (WOX) protein family

(2009) Eric van der Graaff et al.   GENOME BIOLOGY

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

GSTand its relatives do not measure differentiation

(2008) LOU JOST   MOLECULAR ECOLOGY