Exploring the piezotolerant/piezophilic microbial community and genomic basis of piezotolerance within the deep subsurface Deccan traps

Exploration of deep terrestrial subsurface microbiome in Late Cretaceous Deccan traps and underlying Archean basement, India

(2018) Avishek Dutta et al.   Scientific Reports

Fissures and fractures in the Koyna seismogenic zone, western India

(2017) Surajit Misra et al.   JOURNAL OF THE GEOLOGICAL SOCIETY OF INDIA

Deccan basalts in and around Koyna — Warna region, Maharashtra: Some reflections

(2017) K. V. Subbarao et al.   JOURNAL OF THE GEOLOGICAL SOCIETY OF INDIA

Microbial Community Structure of Deep-sea Hydrothermal Vents on the Ultraslow Spreading Southwest Indian Ridge

(2017) Jian Ding et al.   Frontiers in Microbiology

Response of Deep Subsurface Microbial Community to Different Carbon Sources and Electron Acceptors during ∼2 months Incubation in Microcosms

(2017) Lotta Purkamo et al.   Frontiers in Microbiology

Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements

(2016) Supratim Mukherjee et al.   NUCLEIC ACIDS RESEARCH

Cold Shock Proteins: A Minireview with Special Emphasis on Csp-family of Enteropathogenic Yersinia

(2016) Riikka Keto-Timonen et al.   Frontiers in Microbiology

Accurate binning of metagenomic contigs via automated clustering sequences using information of genomic signatures and marker genes

(2016) Hsin-Hung Lin et al.   Scientific Reports

pSW2, a Novel Low-Temperature-Inducible Gene Expression Vector Based on a Filamentous Phage of the Deep-Sea Bacterium Shewanella piezotolerans WP3

(2015) Xin-Wei Yang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams

(2015) Henry Heberle et al.   BMC BIOINFORMATICS

Microbial diversity and adaptation to high hydrostatic pressure in deep-sea hydrothermal vents prokaryotes

(2015) Mohamed Jebbar et al.   EXTREMOPHILES

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Microbial metagenomes from three aquifers in the Fennoscandian shield terrestrial deep biosphere reveal metabolic partitioning among populations

(2015) Xiaofen Wu et al.   ISME Journal

Microbiome composition and geochemical characteristics of deep subsurface high-pressure environment, Pyhäsalmi mine Finland

(2015) Hanna Miettinen et al.   Frontiers in Microbiology

Effects of High Hydrostatic Pressure on Coastal Bacterial Community Abundance and Diversity

(2014) Angeliki Marietou et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Investigations related to scientific deep drilling to study reservoir-triggered earthquakes at Koyna, India

(2014) Harsh Gupta et al.   INTERNATIONAL JOURNAL OF EARTH SCIENCES

rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development

(2014) Steven F. Stoddard et al.   NUCLEIC ACIDS RESEARCH

U-Pb geochronology of the Deccan Traps and relation to the end-Cretaceous mass extinction

(2014) B. Schoene et al.   SCIENCE

A comparison of the Caulobacter NA1000 and K31 genomes reveals extensive genome rearrangements and differences in metabolic potential

(2014) K. Ash et al.   Open Biology

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Taxonomically and functionally diverse microbial communities in deep crystalline rocks of the Fennoscandian shield

(2013) Mari Nyyssönen et al.   ISME Journal

Insights into Denitrification in Methylotenera mobilis from Denitrification Pathway and Methanol Metabolism Mutants

(2013) I. Mustakhimov et al.   JOURNAL OF BACTERIOLOGY

Nature and Extent of the Deep Biosphere

(2013) F. S. Colwell et al.   Reviews in Mineralogy & Geochemistry

High-Pressure Biochemistry and Biophysics

(2013) F. Meersman et al.   Reviews in Mineralogy & Geochemistry

The microbiology of deep-sea hydrothermal vent plumes: ecological and biogeographic linkages to seafloor and water column habitats

(2013) Gregory J. Dick et al.   Frontiers in Microbiology

Three Types of Taxis Used in the Response ofAcidovoraxsp. Strain JS42 to 2-Nitrotoluene

(2012) Christine A. Rabinovitch-Deere et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Subterranean microbial populations metabolize hydrogen and acetate under in situ conditions in granitic groundwater at 450 m depth in the Äspö Hard Rock Laboratory, Sweden

(2012) Karsten Pedersen   FEMS MICROBIOLOGY ECOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Genomes of Three Methylotrophs from a Single Niche Reveal the Genetic and Metabolic Divergence of the Methylophilaceae

(2011) A. Lapidus et al.   JOURNAL OF BACTERIOLOGY

Genome Sequences of Alicycliphilus denitrificans Strains BC and K601T

(2011) M. J. Oosterkamp et al.   JOURNAL OF BACTERIOLOGY

Examining the global distribution of dominant archaeal populations in soil

(2010) Scott T Bates et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Hydrostatic pressure affects physiology and community structure of marine bacteria during settling to 4000 m: an experimental approach

(2009) HP Grossart et al.   MARINE ECOLOGY PROGRESS SERIES

Microbial Communities in Subpermafrost Saline Fracture Water at the Lupin Au Mine, Nunavut, Canada

(2009) T. C. Onstott et al.   MICROBIAL ECOLOGY

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Environmental Adaptation: Genomic Analysis of the Piezotolerant and Psychrotolerant Deep-Sea Iron Reducing Bacterium Shewanella piezotolerans WP3

(2008) Fengping Wang et al.   PLoS One