Whole-genome sequencing of human malignant mesothelioma tumours and cell lines

Histone demethylase KDM5A regulates the ZMYND8–NuRD chromatin remodeler to promote DNA repair

(2017) Fade Gong et al.   JOURNAL OF CELL BIOLOGY

NGSCheckMate: software for validating sample identity in next-generation sequencing studies within and across data types

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Immunotherapy for malignant mesothelioma: reality check

(2016) Bibhusal Thapa et al.   Expert Review of Anticancer Therapy

Comprehensive genomic analysis of malignant pleural mesothelioma identifies recurrent mutations, gene fusions and splicing alterations

(2016) Raphael Bueno et al.   NATURE GENETICS

High-density array-CGH with targeted NGS unmask multiple noncontiguous minute deletions on chromosome 3p21 in mesothelioma

(2016) Yoshie Yoshikawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Best Practices in Treatment Selection for Patients with Advanced NSCLC

(2016) Mark A. Socinski et al.   Cancer Control

Tissue requirements in lung cancer diagnosis for tumor heterogeneity, mutational analysis and targeted therapies: initial experience with intra-operative Frozen Section Evaluation (FROSE) in bronchoscopic biopsies

(2016) Jeffrey S. Iding et al.   Journal of Thoracic Disease

Adequacy of Core Needle Biopsy Specimens and Fine-Needle Aspirates for Molecular Testing of Lung Adenocarcinomas

(2015) Frank Schneider et al.   AMERICAN JOURNAL OF CLINICAL PATHOLOGY

Biomarker testing and time to treatment decision in patients with advanced nonsmall-cell lung cancer†

(2015) C. Lim et al.   ANNALS OF ONCOLOGY

FNA, core biopsy, or both for the diagnosis of lung carcinoma: Obtaining sufficient tissue for a specific diagnosis and molecular testing

(2015) Shana M. Coley et al.   CANCER CYTOPATHOLOGY

BAP1 (BRCA1-associated protein 1) is a highly specific marker for differentiating mesothelioma from reactive mesothelial proliferations

(2015) Marta Cigognetti et al.   MODERN PATHOLOGY

Clock-like mutational processes in human somatic cells

(2015) Ludmil B Alexandrov et al.   NATURE GENETICS

Subclonal diversification of primary breast cancer revealed by multiregion sequencing

(2015) Lucy R Yates et al.   NATURE MEDICINE

Characterization and drug sensitivity profiling of primary malignant mesothelioma cells from pleural effusions

(2014) Adam Szulkin et al.   BMC CANCER

Evaluation of clonal origin of malignant mesothelioma

(2014) Sabahattin Comertpay et al.   Journal of Translational Medicine

PyClone: statistical inference of clonal population structure in cancer

(2014) Andrew Roth et al.   NATURE METHODS

Hypoxia affects in vitro growth of newly established cell lines from patients with malignant pleural mesothelioma

(2013) Houman Goudarzi et al.   BIOMEDICAL RESEARCH-TOKYO

Punctuated Evolution of Prostate Cancer Genomes

(2013) Sylvan C. Baca et al.   CELL

The Clinical Relevance of Cancer Cell Lines

(2013) J.-P. Gillet et al.   JNCI-Journal of the National Cancer Institute

Mutational heterogeneity in cancer and the search for new cancer-associated genes

(2013) Michael S. Lawrence et al.   NATURE

Signatures of mutational processes in human cancer

(2013) Ludmil B. Alexandrov et al.   NATURE

Pan-cancer patterns of somatic copy number alteration

(2013) Travis I Zack et al.   NATURE GENETICS

IntOGen-mutations identifies cancer drivers across tumor types

(2013) Abel Gonzalez-Perez et al.   NATURE METHODS

Phenotypes and Karyotypes of Human Malignant Mesothelioma Cell Lines

(2013) Vandana Relan et al.   PLoS One

Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal

(2013) J. Gao et al.   Science Signaling

Strelka: accurate somatic small-variant calling from sequenced tumor–normal sample pairs

(2012) Christopher T. Saunders et al.   BIOINFORMATICS

DELLY: structural variant discovery by integrated paired-end and split-read analysis

(2012) T. Rausch et al.   BIOINFORMATICS

Mutational Processes Molding the Genomes of 21 Breast Cancers

(2012) Serena Nik-Zainal et al.   CELL

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

A diagnosis of malignant pleural mesothelioma can be made by effusion cytology: results of a 20 year audit

(2012) Amanda Segal et al.   PATHOLOGY

qpure: A Tool to Estimate Tumor Cellularity from Genome-Wide Single-Nucleotide Polymorphism Profiles

(2012) Sarah Song et al.   PLoS One

The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data: Figure 1.

(2012) Ethan Cerami et al.   Cancer Discovery

LATS2 Is a Tumor Suppressor Gene of Malignant Mesothelioma

(2011) H. Murakami et al.   CANCER RESEARCH

Malignant mesothelioma

(2010) R. M. Rudd   BRITISH MEDICAL BULLETIN

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Lung cancer cell lines: Useless artifacts or invaluable tools for medical science?

(2010) Adi F. Gazdar et al.   LUNG CANCER

Occupational, domestic and environmental mesothelioma risks in the British population: a case–control study

(2009) C Rake et al.   BRITISH JOURNAL OF CANCER

Risk of Mesothelioma and Occupational Exposure to Asbestos and Man-Made Vitreous Fibers: Evidence From Two Case-Control Studies in Montreal, Canada

(2009) Javier Pintos et al.   JOURNAL OF OCCUPATIONAL AND ENVIRONMENTAL MEDICINE

Somatic mutations of the histone H3K27 demethylase gene UTX in human cancer

(2009) Gijs van Haaften et al.   NATURE GENETICS

Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays

(2009) Tatiana Popova et al.   GENOME BIOLOGY