Prioritizing candidate genes for fertility in dairy cows using gene-based analysis, functional annotation and differential gene expression

Dissecting closely linked association signals in combination with the mammalian phenotype database can identify candidate genes in dairy cattle

(2019) Zexi Cai et al.   BMC GENETICS

Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals

(2018) Aniek C. Bouwman et al.   NATURE GENETICS

Uterine influences on conceptus development in fertility-classified animals

(2018) Joao G. N. Moraes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Prioritizing candidate genes post-GWAS using multiple sources of data for mastitis resistance in dairy cattle

(2018) Zexi Cai et al.   BMC GENOMICS

Differentially Expressed Genes in Endometrium and Corpus Luteum of Holstein Cows Selected for High and Low Fertility Are Enriched for Sequence Variants Associated with Fertility1

(2016) Stephen G. Moore et al.   BIOLOGY OF REPRODUCTION

Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

(2016) T. Iso-Touru et al.   BMC GENETICS

Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

(2016) Shadi Nayeri et al.   BMC GENETICS

Association analysis for feet and legs disorders with whole-genome sequence variants in 3 dairy cattle breeds

(2016) Xiaoping Wu et al.   JOURNAL OF DAIRY SCIENCE

Identification of genomic regions associated with female fertility in Danish Jersey using whole genome sequence data

(2015) Johanna K. Höglund et al.   BMC GENETICS

The Transcriptome Signature of the Receptive Bovine Uterus Determined at Early Gestation

(2015) Mario Binelli et al.   PLoS One

MAGMA: Generalized Gene-Set Analysis of GWAS Data

(2015) Christiaan A. de Leeuw et al.   PLoS Computational Biology

minimac2: faster genotype imputation

(2014) Christian Fuchsberger et al.   BIOINFORMATICS

Validation of associations for female fertility traits in Nordic Holstein, Nordic Red and Jersey dairy cattle

(2014) Johanna K Höglund et al.   BMC GENETICS

Fine mapping QTL for female fertility on BTA04 and BTA13 in dairy cattle using HD SNP and sequence data

(2014) Johanna K Höglund et al.   BMC GENOMICS

Strategies for imputation to whole genome sequence using a single or multi-breed reference population in cattle

(2014) Rasmus Brøndum et al.   BMC GENOMICS

Mouse BRWD1 is critical for spermatid postmeiotic transcription and female meiotic chromosome stability

(2014) Shrivatsav Pattabiraman et al.   JOURNAL OF CELL BIOLOGY

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

(2014) Hans D Daetwyler et al.   NATURE GENETICS

A 660-Kb Deletion with Antagonistic Effects on Fertility and Milk Production Segregates at High Frequency in Nordic Red Cattle: Additional Evidence for the Common Occurrence of Balancing Selection in Livestock

(2014) Naveen Kumar Kadri et al.   PLoS Genetics

BREEDING AND GENETICS SYMPOSIUM: Networks and pathways to guide genomic selection1–3

(2012) W. M. Snelling et al.   JOURNAL OF ANIMAL SCIENCE

Kruppel-like factor 5 (KLF5) is critical for conferring uterine receptivity to implantation

(2012) X. Sun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spire-Type Actin Nucleators Cooperate with Formin-2 to Drive Asymmetric Oocyte Division

(2011) Sybille Pfender et al.   CURRENT BIOLOGY

Reorganizing the protein space at the Universal Protein Resource (UniProt)

(2011)   NUCLEIC ACIDS RESEARCH

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

(2011) K. D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

Genotype Imputation with Thousands of Genomes

(2011) Bryan Howie et al.   G3-Genes Genomes Genetics

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Genome-wide association mapping for female fertility traits in Danish and Swedish Holstein cattle

(2010) G. Sahana et al.   ANIMAL GENETICS

Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm

(2009) Prateek Kumar et al.   Nature Protocols

A whole-genome assembly of the domestic cow, Bos taurus

(2009) Aleksey V Zimin et al.   GENOME BIOLOGY

Extensive Long-Range and Nonsyntenic Linkage Disequilibrium in Livestock Populations: Deconstruction of a Conundrum

(2008) E. Lipkin et al.   GENETICS