Genomic Selection in Cereal Breeding

Genomic selection using principal component regression

(2018) Caroline Du et al.   HEREDITY

Genomic-Enabled Prediction Kernel Models with Random Intercepts for Multi-environment Trials

(2018) Jaime Cuevas et al.   G3-Genes Genomes Genetics

Optimising Genomic Selection in Wheat: Effect of Marker Density, Population Size and Population Structure on Prediction Accuracy

(2018) Adam Norman et al.   G3-Genes Genomes Genetics

Genomic-enabled Prediction Accuracies Increased by Modeling Genotype × Environment Interaction in Durum Wheat

(2018) Sivakumar Sukumaran et al.   Plant Genome

Genome-Wide Association Studies and Comparison of Models and Cross-Validation Strategies for Genomic Prediction of Quality Traits in Advanced Winter Wheat Breeding Lines

(2018) Peter S. Kristensen et al.   Frontiers in Plant Science

A 100-Year Review: Methods and impact of genetic selection in dairy cattle—From daughter–dam comparisons to deep learning algorithms

(2017) K.A. Weigel et al.   JOURNAL OF DAIRY SCIENCE

Practical application of genomic selection in a doubled-haploid winter wheat breeding program

(2017) Jiayin Song et al.   MOLECULAR BREEDING

Improving the baking quality of bread wheat by genomic selection in early generations

(2017) Sebastian Michel et al.   THEORETICAL AND APPLIED GENETICS

Genomic and pedigree-based prediction for leaf, stem, and stripe rust resistance in wheat

(2017) Philomin Juliana et al.   THEORETICAL AND APPLIED GENETICS

Genomic-Enabled Prediction in Maize Using Kernel Models with Genotype × Environment Interaction

(2017) Massaine Bandeira e Souza et al.   G3-Genes Genomes Genetics

Single-Step Genomic and Pedigree Genotype × Environment Interaction Models for Predicting Wheat Lines in International Environments

(2017) Paulino Pérez-Rodríguez et al.   Plant Genome

Increasing Genomic-Enabled Prediction Accuracy by Modeling Genotype × Environment Interactions in Kansas Wheat

(2017) Diego Jarquín et al.   Plant Genome

Optimizing Training Population Size and Genotyping Strategy for Genomic Prediction Using Association Study Results and Pedigree Information. A Case of Study in Advanced Wheat Breeding Lines

(2017) Fabio Cericola et al.   PLoS One

Breeding schemes for the implementation of genomic selection in wheat ( Triticum spp . )

(2016) Filippo M. Bassi et al.   PLANT SCIENCE

Genomic Prediction of Seed Quality Traits Using Advanced Barley Breeding Lines

(2016) Nanna Hellum Nielsen et al.   PLoS One

Epistasis and covariance: how gene interaction translates into genomic relationship

(2016) Johannes W. R. Martini et al.   THEORETICAL AND APPLIED GENETICS

Genomic assisted selection for enhancing line breeding: merging genomic and phenotypic selection in winter wheat breeding programs with preliminary yield trials

(2016) Sebastian Michel et al.   THEORETICAL AND APPLIED GENETICS

General and specific combining abilities in a maize (Zea mays L.) test-cross hybrid panel: relative importance of population structure and genetic divergence between parents

(2016) A. Larièpe et al.   THEORETICAL AND APPLIED GENETICS

Genomic selection across multiple breeding cycles in applied bread wheat breeding

(2016) Sebastian Michel et al.   THEORETICAL AND APPLIED GENETICS

Breeding progress, environmental variation and correlation of winter wheat yield and quality traits in German official variety trials and on-farm during 1983–2014

(2016) Friedrich Laidig et al.   THEORETICAL AND APPLIED GENETICS

Implementation of the Realized Genomic Relationship Matrix to Open-Pollinated White Spruce Family Testing for Disentangling Additive from Nonadditive Genetic Effects

(2016) Omnia Gamal El-Dien et al.   G3-Genes Genomes Genetics

Adding Genetically Distant Individuals to Training Populations Reduces Genomic Prediction Accuracy in Barley

(2015) Aaron J. Lorenz et al.   CROP SCIENCE

Modeling Epistasis in Genomic Selection

(2015) Yong Jiang et al.   GENETICS

Modeling additive and non-additive effects in a hybrid population using genome-wide genotyping: prediction accuracy implications

(2015) J-M Bouvet et al.   HEREDITY

Impact of relationships between test and training animals and among training animals on reliability of genomic prediction

(2015) X. Wu et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Prediction of malting quality traits in barley based on genome-wide marker data to assess the potential of genomic selection

(2015) Malthe Schmidt et al.   THEORETICAL AND APPLIED GENETICS

Genomic selection in wheat: optimum allocation of test resources and comparison of breeding strategies for line and hybrid breeding

(2015) C. Friedrich H. Longin et al.   THEORETICAL AND APPLIED GENETICS

Comparison of Genomic Selection Models to Predict Flowering Time and Spike Grain Number in Two Hexaploid Wheat Doubled Haploid Populations

(2015) Saravanan Thavamanikumar et al.   G3-Genes Genomes Genetics

Increased Prediction Accuracy in Wheat Breeding Trials Using a Marker × Environment Interaction Genomic Selection Model

(2015) Marco Lopez-Cruz et al.   G3-Genes Genomes Genetics

Modeling Epistasis in Genomic Selection

(2015) Yong Jiang et al.   GENETICS

Comparison of genomic predictions using genomic relationship matrices built with different weighting factors to account for locus-specific variances

(2014) G. Su et al.   JOURNAL OF DAIRY SCIENCE

Training set optimization under population structure in genomic selection

(2014) Julio Isidro et al.   THEORETICAL AND APPLIED GENETICS

Parametric and Nonparametric Statistical Methods for Genomic Selection of Traits with Additive and Epistatic Genetic Architectures

(2014) Réka Howard et al.   G3-Genes Genomes Genetics

Accurate and Robust Genomic Prediction of Celiac Disease Using Statistical Learning

(2014) Gad Abraham et al.   PLoS Genetics

Genomic, Marker-Assisted, and Pedigree-BLUP Selection Methods for β-Glucan Concentration in Elite Oat

(2013) Franco G. Asoro et al.   CROP SCIENCE

Priors in Whole-Genome Regression: The Bayesian Alphabet Returns

(2013) D. Gianola   GENETICS

Genomic prediction in CIMMYT maize and wheat breeding programs

(2013) J Crossa et al.   HEREDITY

Relatedness severely impacts accuracy of marker-assisted selection for disease resistance in hybrid wheat

(2013) M Gowda et al.   HEREDITY

Model comparison on genomic predictions using high-density markers for different groups of bulls in the Nordic Holstein population

(2013) H. Gao et al.   JOURNAL OF DAIRY SCIENCE

A reaction norm model for genomic selection using high-dimensional genomic and environmental data

(2013) Diego Jarquín et al.   THEORETICAL AND APPLIED GENETICS

Accelerating Improvement of Livestock with Genomic Selection

(2013) Theo Meuwissen et al.   Annual Review of Animal Biosciences

Efficiency of genomic selection using Bayesian multi-marker models for traits selected to reflect a wide range of heritabilities and frequencies of detected quantitative traits loci in mice

(2012) Dagmar NRG Kapell et al.   BMC GENETICS

Genetic Gains for Grain Yield in CIMMYT Spring Bread Wheat across International Environments

(2012) R. C. Sharma et al.   CROP SCIENCE

Potential and Optimization of Genomic Selection for Fusarium Head Blight Resistance in Six-Row Barley

(2012) A. J. Lorenz et al.   CROP SCIENCE

Genomic Prediction of Breeding Values when Modeling Genotype × Environment Interaction using Pedigree and Dense Molecular Markers

(2012) Juan Burgueño et al.   CROP SCIENCE

Whole-Genome Regression and Prediction Methods Applied to Plant and Animal Breeding

(2012) G. de los Campos et al.   GENETICS

Application of multiple shrinkage methods to genomic predictions1

(2012) Christian Maltecca et al.   JOURNAL OF ANIMAL SCIENCE

Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels

(2012) M. Erbe et al.   JOURNAL OF DAIRY SCIENCE

Genomic and metabolic prediction of complex heterotic traits in hybrid maize

(2012) Christian Riedelsheimer et al.   NATURE GENETICS

Improved LASSO priors for shrinkage quantitative trait loci mapping

(2012) Ming Fang et al.   THEORETICAL AND APPLIED GENETICS

Comparison Between Linear and Non-parametric Regression Models for Genome-Enabled Prediction in Wheat

(2012) Paulino Pérez-Rodríguez et al.   G3-Genes Genomes Genetics

Extension of the bayesian alphabet for genomic selection

(2011) David Habier et al.   BMC BIOINFORMATICS

Genomic Selection in Plant Breeding: A Comparison of Models

(2011) Nicolas Heslot et al.   CROP SCIENCE

Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP

(2011) Jeffrey B. Endelman   Plant Genome

Preliminary investigation on reliability of genomic estimated breeding values in the Danish Holstein population

(2010) G. Su et al.   JOURNAL OF DAIRY SCIENCE

Factors Affecting Accuracy From Genomic Selection in Populations Derived From Multiple Inbred Lines: A Barley Case Study

(2009) S. Zhong et al.   GENETICS

Accuracy of genomic selection using stochastic search variable selection in Australian Holstein Friesian dairy cattle

(2009) KLARA L. VERBYLA et al.   Genetics Research

A relationship matrix including full pedigree and genomic information

(2009) A. Legarra et al.   JOURNAL OF DAIRY SCIENCE

Invited review: Genomic selection in dairy cattle: Progress and challenges

(2009) B.J. Hayes et al.   JOURNAL OF DAIRY SCIENCE

Reproducing Kernel Hilbert Spaces Regression Methods for Genomic Assisted Prediction of Quantitative Traits

(2008) D. Gianola et al.   GENETICS

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

The Bayesian Lasso

(2008) Trevor Park et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

Simultaneous Analysis of All SNPs in Genome-Wide and Re-Sequencing Association Studies

(2008) Clive J. Hoggart et al.   PLoS Genetics