Oxidative Pathways of Deoxyribose and Deoxyribonate Catabolism

Mutant phenotypes for thousands of bacterial genes of unknown function

(2018) Morgan N. Price et al.   NATURE

Genome-wide identification of bacterial plant colonization genes

(2017) Benjamin J. Cole et al.   PLOS BIOLOGY

A metabolic pathway for catabolizing levulinic acid in bacteria

(2017) Jacqueline M. Rand et al.   Nature Microbiology

PaperBLAST: Text Mining Papers for Information about Homologs

(2017) Morgan N. Price et al.   mSystems

'Nothing of chemistry disappears in biology: the Top 30 damage-prone endogenous metabolites

(2016) C. Lerma-Ortiz et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center

(2016) Alice R. Wattam et al.   NUCLEIC ACIDS RESEARCH

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

CceR and AkgR Regulate Central Carbon and Energy Metabolism in Alphaproteobacteria

(2015) Saheed Imam et al.   mBio

Rapid Quantification of Mutant Fitness in Diverse Bacteria by Sequencing Randomly Bar-Coded Transposons

(2015) Kelly M. Wetmore et al.   mBio

An Estimate of the Total DNA in the Biosphere

(2015) Hanna K. E. Landenmark et al.   PLOS BIOLOGY

An In Vivo Metabolic Approach for Deciphering the Product Specificity of Glycerate Kinase Proves that Both E. coli’s Glycerate Kinases Generate 2-Phosphoglycerate

(2015) Lior Zelcbuch et al.   PLoS One

l-Arabinose/d-galactose 1-dehydrogenase of Rhizobium leguminosarum bv. trifolii characterised and applied for bioconversion of l-arabinose to l-arabonate with Saccharomyces cerevisiae

(2014) Niina Aro-Kärkkäinen et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Comprehensive proteome analysis of the response of Pseudomonas putida KT2440 to the flavor compound vanillin

(2014) Oliver Simon et al.   Journal of Proteomics

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Genetic engineering of Pseudomonas putida KT2440 for rapid and high-yield production of vanillin from ferulic acid

(2013) Nadja Graf et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria

(2013) Pavel S Novichkov et al.   BMC GENOMICS

Effects of Traveling Wave Ion Mobility Separation on Data Independent Acquisition in Proteomics Studies

(2013) Pavel V. Shliaha et al.   JOURNAL OF PROTEOME RESEARCH

Revealing the hidden functional diversity of an enzyme family

(2013) Karine Bastard et al.   Nature Chemical Biology

Drift time-specific collision energies enable deep-coverage data-independent acquisition proteomics

(2013) Ute Distler et al.   NATURE METHODS

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Metabolic Footprinting of Mutant Libraries to Map Metabolite Utilization to Genotype

(2012) Richard Baran et al.   ACS Chemical Biology

Tools for Label-free Peptide Quantification

(2012) Sven Nahnsen et al.   MOLECULAR & CELLULAR PROTEOMICS

TIGRFAMs and Genome Properties in 2013

(2012) Daniel H. Haft et al.   NUCLEIC ACIDS RESEARCH

Less label, more free: Approaches in label-free quantitative mass spectrometry

(2011) Karlie A. Neilson et al.   PROTEOMICS

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes

(2010) Nancy Y. Yu et al.   BIOINFORMATICS

MicrobesOnline: an integrated portal for comparative and functional genomics

(2009) P. S. Dehal et al.   NUCLEIC ACIDS RESEARCH

Only plant-type (GLYK) glycerate kinases produced-glycerate 3-phosphate

(2008) Oliver Bartsch et al.   FEBS LETTERS