Metagenomic reconstructions of gut microbial metabolism in weanling pigs

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Genetic Analysis of Human Norovirus Strains in Japan in 2016–2017

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Probiotic Bifidobacterium strains and galactooligosaccharides improve intestinal barrier function in obese adults but show no synergism when used together as synbiotics

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Host Genome Influence on Gut Microbial Composition and Microbial Prediction of Complex Traits in Pigs

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Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation

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Specific substrate-driven changes in human faecal microbiota composition contrast with functional redundancy in short-chain fatty acid production

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1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

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Host Genome Influence on Gut Microbial Composition and Microbial Prediction of Complex Traits in Pigs

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Modulation of the human gut microbiota by dietary fibres occurs at the species level

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Fitness and Recovery of Bacterial Communities and Antibiotic Resistance Genes in Urban Wastewaters Exposed to Classical Disinfection Treatments

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Review: Dietary fiber utilization and its effects on physiological functions and gut health of swine

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Adaptation of the Cecal Bacterial Microbiome of Growing Pigs in Response to Resistant Starch Type 4

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Feed Fermentation with Reuteran- and Levan-Producing Lactobacillus reuteri Reduces Colonization of Weanling Pigs by Enterotoxigenic Escherichia coli

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Longitudinal study of the early-life fecal and nasal microbiotas of the domestic pig

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Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life

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CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

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Divergence across diet, time and populations rules out parallel evolution in the gut microbiomes of Trinidadian guppies

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Unique Organization of Extracellular Amylases into Amylosomes in the Resistant Starch-Utilizing Human Colonic Firmicutes Bacterium Ruminococcus bromii

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Diet shapes the gut microbiome of pigs during nursing and weaning

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Relevance of functional properties of dietary fibre in diets for weanling pigs

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Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations

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A Perspective on the Complexity of Dietary Fiber Structures and Their Potential Effect on the Gut Microbiota

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Molecular details of a starch utilization pathway in the human gut symbiontEubacterium rectale

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Cloning, expression and functional validation of a β-fructofuranosidase from Lactobacillus plantarum

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MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm

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Gene-targeted metagenomic analysis of glucan-branching enzyme gene profiles among human and animal fecal microbiota

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A Diet High in Resistant Starch Modulates Microbiota Composition, SCFA Concentrations, and Gene Expression in Pig Intestine

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Use of pigs as a potential model for research into dietary modulation of the human gut microbiota

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PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes

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Feed- and feed additives-related aspects of gut health and development in weanling pigs

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IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

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Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization

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Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon

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How glycan metabolism shapes the human gut microbiota

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Metabolism of Oligosaccharides and Starch in Lactobacilli: A Review

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The role of carbohydrates in intestinal health of pigs

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Nonstarch Polysaccharides Modulate Bacterial Microbiota, Pathways for Butyrate Production, and Abundance of Pathogenic Escherichia coli in the Pig Gastrointestinal Tract

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Search and clustering orders of magnitude faster than BLAST

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Prodigal: prokaryotic gene recognition and translation initiation site identification

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Specificity of Polysaccharide Use in Intestinal Bacteroides Species Determines Diet-Induced Microbiota Alterations

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QIIME allows analysis of high-throughput community sequencing data

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Nutritional programming of gastrointestinal tract development. Is the pig a good model for man?

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Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors

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Substrate-driven gene expression in Roseburia inulinivorans: Importance of inducible enzymes in the utilization of inulin and starch

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Heterologous expression of glycoside hydrolase family 2 and 42 β-galactosidases of lactic acid bacteria in Lactococcus lactis

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Complex Glycan Catabolism by the Human Gut Microbiota: The Bacteroidetes Sus-like Paradigm

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