Oral administration of antibiotics increased the potential mobility of bacterial resistance genes in the gut of the fish Piaractus mesopotamicus

Abundance of antibiotic resistance genes and bacterial community composition in wild freshwater fish species

(2018) Elisabet Marti et al.   CHEMOSPHERE

Prevalence of antibiotic resistance genes from effluent of coastal aquaculture, South Korea

(2018) Hyun Min Jang et al.   ENVIRONMENTAL POLLUTION

PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures

(2018) Pawel S Krawczyk et al.   NUCLEIC ACIDS RESEARCH

Extensively Drug-Resistant Klebsiella pneumoniae Causing Nosocomial Bloodstream Infections in China: Molecular Investigation of Antibiotic Resistance Determinants, Informing Therapy, and Clinical Outcomes

(2017) Wenzi Bi et al.   Frontiers in Microbiology

The Resistome of Farmed Fish Feces Contributes to the Enrichment of Antibiotic Resistance Genes in Sediments below Baltic Sea Fish Farms

(2017) Windi I. Muziasari et al.   Frontiers in Microbiology

Molecular characterization and antimicrobial resistance profile of atypical Citrobacter gillenii and Citrobacter sp. isolated from diseased rainbow trout ( Oncorhynchus mykiss )

(2017) Muhammed Duman et al.   Journal of Global Antimicrobial Resistance

Association between selected antimicrobial resistance genes and antimicrobial exposure in Danish pig farms

(2017) Anna Camilla Birkegård et al.   Scientific Reports

Bacterial viruses enable their host to acquire antibiotic resistance genes from neighbouring cells

(2016) Jakob Haaber et al.   Nature Communications

Fast and sensitive taxonomic classification for metagenomics with Kaiju

(2016) Peter Menzel et al.   Nature Communications

The antibiotic resistome: what's new?

(2014) Julie Ann Perry et al.   CURRENT OPINION IN MICROBIOLOGY

Sulphonamide and Trimethoprim Resistance Genes Persist in Sediments at Baltic Sea Aquaculture Farms but Are Not Detected in the Surrounding Environment

(2014) Windi Indra Muziasari et al.   PLoS One

Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions

(2013) Jaina Mistry et al.   NUCLEIC ACIDS RESEARCH

Antibiotic resistance shaping multi-level population biology of bacteria

(2013) Fernando Baquero et al.   Frontiers in Microbiology

TnpPred: A Web Service for the Robust Prediction of Prokaryotic Transposases

(2012) Gonzalo Riadi et al.   COMPARATIVE AND FUNCTIONAL GENOMICS

Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

(2011) Robert Schmieder et al.   PLoS One

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY