Processing serial crystallography data with CrystFEL: a step-by-step guide

Data Analysis using Psocake at PAL-XFEL

(2018) Hocheol Shin et al.   JOURNAL OF THE KOREAN PHYSICAL SOCIETY

FELIX: an algorithm for indexing multiple crystallites in X-ray free-electron laser snapshot diffraction images

(2017) Kenneth R. Beyerlein et al.   JOURNAL OF APPLIED CRYSTALLOGRAPHY

The slip-and-slide algorithm: a refinement protocol for detector geometry

(2017) Helen Mary Ginn et al.   JOURNAL OF SYNCHROTRON RADIATION

TakeTwo: an indexing algorithm suited to still images with known crystal parameters

(2016) Helen Mary Ginn et al.   Acta Crystallographica Section D-Structural Biology

Protein structure determination by single-wavelength anomalous diffraction phasing of X-ray free-electron laser data

(2016) Karol Nass et al.   IUCrJ

Recent developments inCrystFEL

(2016) Thomas A. White et al.   JOURNAL OF APPLIED CRYSTALLOGRAPHY

Data processing pipeline for serial femtosecond crystallography at SACLA

(2016) Takanori Nakane et al.   JOURNAL OF APPLIED CRYSTALLOGRAPHY

CFEL–ASG Software Suite(CASS): usage for free-electron laser experiments with biological focus

(2016) Lutz Foucar   JOURNAL OF APPLIED CRYSTALLOGRAPHY

OnDA: online data analysis and feedback for serial X-ray imaging

(2016) Valerio Mariani et al.   JOURNAL OF APPLIED CRYSTALLOGRAPHY

Data systems for the Linac Coherent Light Source

(2016) J. Thayer et al.   JOURNAL OF APPLIED CRYSTALLOGRAPHY

Serial femtosecond crystallography datasets from G protein-coupled receptors

(2016) Thomas A. White et al.   Scientific Data

Assessing and maximizing data quality in macromolecular crystallography

(2015) P Andrew Karplus et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

AGIPD, a high dynamic range fast detector for the European XFEL

(2015) A. Allahgholi et al.   Journal of Instrumentation

Accurate determination of segmented X-ray detector geometry

(2015) Oleksandr Yefanov et al.   OPTICS EXPRESS

Structure of CPV17 polyhedrin determined by the improved analysis of serial femtosecond crystallographic data

(2015) Helen M. Ginn et al.   Nature Communications

A revised partiality model and post-refinement algorithm for X-ray free-electron laser data

(2015) Helen Mary Ginn et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

The NeXus data format

(2015) Mark Könnecke et al.   JOURNAL OF APPLIED CRYSTALLOGRAPHY

Post-refinement method for snapshot serial crystallography

(2014) T. A. White   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Development of an X-ray pixel detector with multi-port charge-coupled device for X-ray free-electron laser experiments

(2014) Takashi Kameshima et al.   REVIEW OF SCIENTIFIC INSTRUMENTS

The indexing ambiguity in serial femtosecond crystallography (SFX) resolved using an expectation maximization algorithm

(2014) Haiguang Liu et al.   IUCrJ

Serial crystallography onin vivogrown microcrystals using synchrotron radiation

(2014) Cornelius Gati et al.   IUCrJ

Room-temperature macromolecular serial crystallography using synchrotron radiation

(2014) Francesco Stellato et al.   IUCrJ

Cheetah: software for high-throughput reduction and analysis of serial femtosecond X-ray diffraction data

(2014) Anton Barty et al.   JOURNAL OF APPLIED CRYSTALLOGRAPHY

Crystallographic data processing for free-electron laser sources

(2013) Thomas A. White et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Solution of the effects of twinning in femtosecond X-ray protein nanocrystallography

(2013) Liang Zhou et al.   Chinese Physics C

Algorithmic framework for X-ray nanocrystallographic reconstruction in the presence of the indexing ambiguity

(2013) J. J. Donatelli et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Serial Femtosecond Crystallography of G Protein-Coupled Receptors

(2013) W. Liu et al.   SCIENCE

Breaking the indexing ambiguity in serial crystallography

(2013) Wolfgang Brehm et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

CrystFEL: a software suite for snapshot serial crystallography

(2012) Thomas A. White et al.   JOURNAL OF APPLIED CRYSTALLOGRAPHY

The case for open computer programs

(2012) Darrel C. Ince et al.   NATURE

Linking Crystallographic Model and Data Quality

(2012) P. A. Karplus et al.   SCIENCE

Overview of theCCP4 suite and current developments

(2011) Martyn D. Winn et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Femtosecond X-ray protein nanocrystallography

(2011) Henry N. Chapman et al.   NATURE

Integration, scaling, space-group assignment and post-refinement

(2010) Wolfgang Kabsch   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY