4.7 Article

Automatic Counting of in situ Rice Seedlings from UAV Images Based on a Deep Fully Convolutional Neural Network

Journal

REMOTE SENSING
Volume 11, Issue 6, Pages -

Publisher

MDPI
DOI: 10.3390/rs11060691

Keywords

rice seedlings; object counting; computer vision; deep learning; fully convolutional neural networks

Funding

  1. National Key Research and Development Program of China [2017YFE0122500, 2016YFD020060306]
  2. Natural Science Foundation of China [41771469, 41571323]
  3. Beijing Natural Science Foundation [6182011]
  4. Beijing Academy of Agriculture and Forestry Sciences [KJCX20170423]

Ask authors/readers for more resources

The number of rice seedlings in the field is one of the main agronomic components for determining rice yield. This counting task, however, is still mainly performed using human vision rather than computer vision and is thus cumbersome and time-consuming. A fast and accurate alternative method of acquiring such data may contribute to monitoring the efficiency of crop management practices, to earlier estimations of rice yield, and as a phenotyping trait in breeding programs. In this paper, we propose an efficient method that uses computer vision to accurately count rice seedlings in a digital image. First, an unmanned aerial vehicle (UAV) equipped with red-green-blue (RGB) cameras was used to acquire field images at the seedling stage. Next, we use a regression network (Basic Network) inspired by a deep fully convolutional neural network to regress the density map and estimate the number of rice seedlings for a given UAV image. Finally, an improved version of the Basic Network, the Combined Network, is also proposed to further improve counting accuracy. To explore the efficacy of the proposed method, a novel rice seedling counting (RSC) dataset was built, which consisted of 40 images (where the number of seedlings varied between 3732 and 16,173) and corresponding manually-dotted annotations. The results demonstrated high average accuracy (higher than 93%) between counts according to the proposed method and manual (UAV image-based) rice seedling counts, and very good performance, with a high coefficient of determination (R-2) (around 0.94). In conclusion, the results indicate that the proposed method is an efficient alternative for large-scale counting of rice seedlings, and offers a new opportunity for yield estimation. The RSC dataset and source code are available online.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.7
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Geochemistry & Geophysics

Extraction of Maize Leaf Base and Inclination Angles Using Terrestrial Laser Scanning (TLS) Data

Lei Lei, Zhenhong Li, Jintao Wu, Chengjian Zhang, Yaohui Zhu, Riqiang Chen, Zhen Dong, Hao Yang, Guijun Yang

Summary: This study presented two methods, machine learning-based and structure-based, to extract leaf base and inclination angles of maize plants. The machine learning-based method demonstrated higher estimation accuracy compared to the structure-based method. The results showed good agreement with the ground truth, indicating the effectiveness of both methods in estimating leaf base and inclination angles of maize plants.

IEEE TRANSACTIONS ON GEOSCIENCE AND REMOTE SENSING (2022)

Article Geochemistry & Geophysics

SSRNet: In-Field Counting Wheat Ears Using Multi-Stage Convolutional Neural Network

Daoyong Wang, Dongyan Zhang, Guijun Yang, Bo Xu, Yaowu Luo, Xiaodong Yang

Summary: A new wheat ear counting algorithm based on computer vision, utilizing SSRNet including FCNN and RCNN, was proposed to accurately and quickly count wheat ears in field conditions. The method effectively handles small sample datasets and accurately counts wheat ears in complex backgrounds.

IEEE TRANSACTIONS ON GEOSCIENCE AND REMOTE SENSING (2022)

Article Remote Sensing

Estimation of crop residue cover in rice paddies by a dynamic-quadripartite pixel model based on Sentinel-2A data

Zhendong Sun, Qilei Zhu, Shangqi Deng, Xu Li, Xueqian Hu, Riqiang Chen, Guowen Shao, Hao Yang, Guijun Yang

Summary: This study proposes a dynamic quadripartite pixel model (DQPM) to calculate rice residue cover (RRC) in complex paddy field scenarios. By considering soil moisture content, DQPM achieves the best robustness under various soil moisture and RRC scenarios, resulting in more accurate calculations compared to traditional static models and dynamic dimidiate pixel models.

INTERNATIONAL JOURNAL OF APPLIED EARTH OBSERVATION AND GEOINFORMATION (2022)

Article Agriculture, Multidisciplinary

Non-destructive and in-site estimation of apple quality and maturity by hyperspectral imaging

Fan Wang, Chunjiang Zhao, Hao Yang, Hongzhe Jiang, Long Li, Guijun Yang

Summary: This study explores the potential of hyperspectral imaging in assessing the quality and maturity of apples. By collecting hyperspectral images and using statistical analysis, a NDSI-SCARS-PLSR model was established, which accurately estimates the firmness, soluble solids content, and starch pattern index of apples.

COMPUTERS AND ELECTRONICS IN AGRICULTURE (2022)

Article Agriculture, Multidisciplinary

Developing machine learning models with multi-source environmental data to predict wheat yield in China

Linchao Li, Bin Wang, Puyu Feng, De Li Liu, Qinsi He, Yajie Zhang, Yakai Wang, Siyi Li, Xiaoliang Lu, Chao Yue, Yi Li, Jianqiang He, Hao Feng, Guijun Yang, Qiang Yu

Summary: This study integrated multi-source environmental variables into random forest and support vector machine models for wheat yield prediction in China. The results showed that using remotely sensed vegetation indices improved the precision of the models, with near-infrared reflectance being slightly better than other indices. The relative importance and partial dependence analyses identified the main predictors and their relationships with wheat yield.

COMPUTERS AND ELECTRONICS IN AGRICULTURE (2022)

Article Agriculture, Multidisciplinary

An explainable XGBoost model improved by SMOTE-ENN technique for maize lodging detection based on multi-source unmanned aerial vehicle images

Liang Han, Guijun Yang, Xiaodong Yang, Xiaoyu Song, Bo Xu, Zhenhai Li, Jintao Wu, Hao Yang, Jianwei Wu

Summary: This study uses machine learning models based on remote sensing images to detect crop lodging. The study uses Synthetic Minority Oversampling Technique and Edited Nearest Neighbors to handle imbalanced datasets, and proposes the SMOTE-ENN-XGBoost model for identifying maize lodging at the plot scale. SHapley Additive exPlanations approach is employed to interpret the features that determine lodging classification and activity prediction. The results suggest that canopy structure, spectral, and textural features should be considered simultaneously for accurate detection of crop lodging in crop breeding programs.

COMPUTERS AND ELECTRONICS IN AGRICULTURE (2022)

Article Agronomy

Spatial heterogeneity of county-level grain protein content in winter wheat in the Huang-Huai-Hai region of China

Yu Zhao, Zhenhai Li, Xuexu Hu, Guijun Yang, Bujun Wang, Dandan Duan, Yuanyuan Fu, Jian Liang, Chunjiang Zhao

Summary: Timely and accurate prediction of winter wheat grain protein content is important for achieving target protein levels. A geographically weighted regression model based on meteorological factors was used to predict winter wheat GPC at the county level. The model showed higher precision than the multiple linear regressions model.

EUROPEAN JOURNAL OF AGRONOMY (2022)

Article Environmental Sciences

Comparison and transferability of thermal, temporal and phenological-based in-season predictions of above-ground biomass in wheat crops from proximal crop reflectance data

Zhenhai Li, Yu Zhao, James Taylor, Rachel Gaulton, Xiuliang Jin, Xiaoyu Song, Zhenhong Li, Yang Meng, Pengfei Chen, Haikuan Feng, Chao Wang, Wei Guo, Xingang Xu, Liping Chen, Guijun Yang

Summary: Timely monitoring of above-ground biomss is important for crop growth and yield prediction. In this study, a new crop biomass algorithm was developed to estimate winter wheat biomass using phenological observations and remote sensing data. The algorithm showed good performance in different test sites and has the potential for biomass estimation at regional scales.

REMOTE SENSING OF ENVIRONMENT (2022)

Article Agronomy

Forecasting Alternaria Leaf Spot in Apple with Spatial-Temporal Meteorological and Mobile Internet-Based Disease Survey Data

Yujuan Huang, Jingcheng Zhang, Jingwen Zhang, Lin Yuan, Xianfeng Zhou, Xingang Xu, Guijun Yang

Summary: This study proposed a forecasting model for the Alternaria Leaf Spot (ALS) disease in apple based on mobile internet disease survey data and high resolution spatial-temporal meteorological data. By utilizing machine learning algorithms, the study achieved an overall accuracy of 88% and Kappa of 0.53. The results demonstrated that with the aid of mobile internet technology and properly cleaned data, it is possible to collect necessary data for disease forecasting in a short time and achieve regional-scale disease prediction.

AGRONOMY-BASEL (2022)

Review Immunology

Immune cell profiling of preeclamptic pregnant and postpartum women by single-cell RNA sequencing

Jing Hu, Qi Guo, Congcong Liu, Qian Yu, Yuan Ren, Yueni Wu, Qin Li, Yuezhen Li, Juntao Liu

Summary: This study analyzed the immune cells of preeclampsia (PE) patients using single-cell RNA sequencing and found excessive inflammatory state in monocytes, NK cells, and B cells, as well as lower activation of memory T cells in PE patients. These findings suggest an immune imbalance in PE and provide potential therapeutic strategies for monitoring and treating the condition.

INTERNATIONAL REVIEWS OF IMMUNOLOGY (2022)

Article Forestry

Research on Tea Trees Germination Density Detection Based on Improved YOLOv5

Jinghua Wang, Xiang Li, Guijun Yang, Fan Wang, Sen Men, Bo Xu, Ze Xu, Haibin Yang, Lei Yan

Summary: In this research, the Improved YOLOv5 model was used to identify tea buds and detect germination density based on tea trees canopy visible images. The experimental results showed that the Improved YOLOv5 model achieved higher precision and recall rates compared to the original models. This research is of great significance for the scientific planning of tea bud picking and improving the production efficiency and quality of tea production.

FORESTS (2022)

Article Computer Science, Software Engineering

Constraint-aware and multi-objective optimization for micro-service composition in mobile edge computing

Jintao Wu, Jingyi Zhang, Yiwen Zhang, Yiping Wen

Summary: Mobile edge computing (MEC) is a new paradigm of distributed computing that has gained attention for its ability to expand centralized cloud computing. However, the composition of micro-services in MEC is a challenging research issue that involves resource utilization, user experience, and request latency complexity.

SOFTWARE-PRACTICE & EXPERIENCE (2023)

Article Computer Science, Information Systems

A hierarchical growth method for extracting 3D phenotypic trait of apple tree branch in edge computing

Yifan Zhang, Jintao Wu, Hao Yang, Chengjian Zhang, Yutao Tang

Summary: Accurately obtaining the length, quantity, and distribution of fruit branches is crucial for orchard management, disease control, and improving fruit yield and quality. Edge computing has been proposed to address the challenges of efficiency and accuracy that traditional centralized computing methods face due to the diversity of fruit tree morphological structures and complex planting environments. In this study, a hierarchical growing method (HG) is proposed for edge deployment to achieve semantic and instance segmentation of fruit tree point clouds and extract phenotypic traits at the organ scale. Experimental results demonstrate that the HG method efficiently performs instance segmentation and phenotypic trait extraction with high accuracy.

WIRELESS NETWORKS (2023)

Article Agriculture, Multidisciplinary

Effect and economic benefit of precision seeding and laser land leveling for winter wheat in the middle of China

Jing Chen, Chunjiang Zhao, Glyn Jones, Hao Yang, Zhenhong Li, Guijun Yang, Liping Chen, Yongchang Wu

Summary: Rapid socio-economic changes in China have created opportunities for the application of precision agriculture. An experiment evaluating the economic benefits of precision seeding and land leveling methods showed that they can increase crop yield and reduce soil nitrogen concentration. Considering the long-term benefits, the economic assessment needs to accurately estimate the return on investment.

ARTIFICIAL INTELLIGENCE IN AGRICULTURE (2022)

No Data Available