Occupancy models for citizen‐science data

The second Southern African Bird Atlas Project: Causes and consequences of geographical sampling bias

(2017) Sanet Hugo et al.   Ecology and Evolution

Avian Species and Functional Diversity in Agricultural Landscapes: Does Landscape Heterogeneity Matter?

(2017) Myung-Bok Lee et al.   PLoS One

Dynamic occupancy models for explicit colonization processes

(2016) Kristin M. Broms et al.   ECOLOGY

Estimating indices of range shifts in birds using dynamic models when detection is imperfect

(2016) Matthew J. Clement et al.   GLOBAL CHANGE BIOLOGY

Coupled range dynamics of brood parasites and their hosts responding to climate and vegetation changes

(2016) Guillaume Péron et al.   JOURNAL OF ANIMAL ECOLOGY

The spatial distribution of African savannah herbivores: species associations and habitat occupancy in a landscape context

(2016) T. Michael Anderson et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Variational Bayes Approach to the Analysis of Occupancy Models

(2016) Allan E. Clark et al.   PLoS One

Impacts of neonicotinoid use on long-term population changes in wild bees in England

(2016) Ben A. Woodcock et al.   Nature Communications

Electric crows: powerlines, climate change and the emergence of a native invader

(2015) S. J. Cunningham et al.   DIVERSITY AND DISTRIBUTIONS

Modeling false positive detections in species occurrence data under different study designs

(2015) Thierry Chambert et al.   ECOLOGY

Twenty-five years of change in southern African passerine diversity: nonclimatic factors of change

(2015) Guillaume Péron et al.   GLOBAL CHANGE BIOLOGY

Performance of species occurrence estimators when basic assumptions are not met: a test using field data where true occupancy status is known

(2015) David A. W. Miller et al.   Methods in Ecology and Evolution

Testing hypotheses on distribution shifts and changes in phenology of imperfectly detectable species

(2015) Thierry Chambert et al.   Methods in Ecology and Evolution

Accounting for false-positive acoustic detections of bats using occupancy models

(2014) Matthew J. Clement et al.   JOURNAL OF APPLIED ECOLOGY

Testing metapopulation concepts: effects of patch characteristics and neighborhood occupancy on the dynamics of an endangered lagomorph

(2014) Mitchell J. Eaton et al.   OIKOS

Statistics for citizen science: extracting signals of change from noisy ecological data

(2014) Nick J. B. Isaac et al.   Methods in Ecology and Evolution

Spatial occupancy models applied to atlas data show Southern Ground Hornbills strongly depend on protected areas

(2013) Kristin M. Broms et al.   ECOLOGICAL APPLICATIONS

Protected area networks and savannah bird biodiversity in the face of climate change and land degradation

(2013) Colin M. Beale et al.   ECOLOGY LETTERS

Determining Occurrence Dynamics when False Positives Occur: Estimating the Range Dynamics of Wolves from Public Survey Data

(2013) David A. W. Miller et al.   PLoS One

Advances and applications of occupancy models

(2013) Larissa L. Bailey et al.   Methods in Ecology and Evolution

A comparison of Maxlike and Maxent for modelling species distributions

(2013) Cory Merow et al.   Methods in Ecology and Evolution

Dynamic occupancy models for analyzing species' range dynamics across large geographic scales

(2013) Florent Bled et al.   Ecology and Evolution

To boldly go where no volunteer has gone before: predicting volunteer activity to prioritize surveys at the landscape scale

(2012) Ayesha I. T. Tulloch et al.   DIVERSITY AND DISTRIBUTIONS

Experimental investigation of false positive errors in auditory species occurrence surveys

(2012) David A. W. Miller et al.   ECOLOGICAL APPLICATIONS

Neighborhood and habitat effects on vital rates: expansion of the Barred Owl in the Oregon Coast Ranges

(2012) Charles B. Yackulic et al.   ECOLOGY

Spatial occupancy models for large data sets

(2012) Devin S. Johnson et al.   ECOLOGY

Relaxing the closure assumption in occupancy models: staggered arrival and departure times

(2012) William L. Kendall et al.   ECOLOGY

A behavioural ecology approach to understand volunteer surveying for citizen science datasets

(2012) Ayesha I. T. Tulloch et al.   EMU

The current state of citizen science as a tool for ecological research and public engagement

(2012) Janis L Dickinson et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Dimension reduction and alleviation of confounding for spatial generalized linear mixed models

(2012) John Hughes et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

Designing studies to detect differences in species occupancy: power analysis under imperfect detection

(2012) Gurutzeta Guillera-Arroita et al.   Methods in Ecology and Evolution

Occupancy in continuous habitat

(2012) Murray G. Efford et al.   Ecosphere

Methods to detect species range size change from biological atlas data: A comparison using the South African Frog Atlas Project

(2011) Emily A. Botts et al.   BIOLOGICAL CONSERVATION

Improving occupancy estimation when two types of observational error occur: non-detection and species misidentification

(2011) David A. Miller et al.   ECOLOGY

Modelling relationships between species spatial abundance patterns and climate

(2011) Brian Huntley et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Species Occupancy Modeling for Detection Data Collected Along a Transect

(2011) Gurutzeta Guillera-Arroita et al.   JOURNAL OF AGRICULTURAL BIOLOGICAL AND ENVIRONMENTAL STATISTICS

Novel methods reveal shifts in migration phenology of barn swallows in South Africa

(2011) R. Altwegg et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Integrating biodiversity distribution knowledge: toward a global map of life

(2011) Walter Jetz et al.   TRENDS IN ECOLOGY & EVOLUTION

Adding Spatially-Correlated Errors Can Mess Up the Fixed Effect You Love

(2010) James S. Hodges et al.   AMERICAN STATISTICIAN

Citizen Science as an Ecological Research Tool: Challenges and Benefits

(2010) Janis L. Dickinson et al.   Annual Review of Ecology Evolution and Systematics

When have we looked hard enough? A novel method for setting minimum survey effort protocols for flora surveys

(2010) GEORGIA E. GARRARD et al.   AUSTRAL ECOLOGY

Site-Occupancy Distribution Modeling to Correct Population-Trend Estimates Derived from Opportunistic Observations

(2010) MARC KÉRY et al.   CONSERVATION BIOLOGY

Getting the most out of atlas data

(2010) M. P. Robertson et al.   DIVERSITY AND DISTRIBUTIONS

Conservation biogeography - foundations, concepts and challenges

(2010) David M. Richardson et al.   DIVERSITY AND DISTRIBUTIONS

Hierarchical modeling of an invasive spread: the Eurasian Collared-Dove Streptopelia decaocto in the United States

(2010) Florent Bled et al.   ECOLOGICAL APPLICATIONS

Unmodeled observation error induces bias when inferring patterns and dynamics of species occurrence via aural detections

(2010) Brett T. McClintock et al.   ECOLOGY

Seeking a second opinion: uncertainty in disease ecology

(2010) Brett T. McClintock et al.   ECOLOGY LETTERS

Design of occupancy studies with imperfect detection

(2010) Gurutzeta Guillera-Arroita et al.   Methods in Ecology and Evolution

eBird: A citizen-based bird observation network in the biological sciences

(2009) Brian L. Sullivan et al.   BIOLOGICAL CONSERVATION

Occupancy estimation and the closure assumption

(2009) Christopher T. Rota et al.   JOURNAL OF APPLIED ECOLOGY

A cautionary note on substituting spatial subunits for repeated temporal sampling in studies of site occupancy

(2009) William L. Kendall et al.   JOURNAL OF APPLIED ECOLOGY

Trend estimation in populations with imperfect detection

(2009) Marc Kéry et al.   JOURNAL OF APPLIED ECOLOGY

Climate and the range dynamics of species with imperfect detection

(2008) R. Altwegg et al.   Biology Letters

Imperfect detection and its consequences for monitoring for conservation

(2008) M. Kéry et al.   COMMUNITY ECOLOGY

A review of terrestrial bird atlases of the world and their application

(2008) Andrew M. Dunn et al.   EMU

A novel field evaluation of the effectiveness of distance and independent observer sampling to estimate aural avian detection probabilities

(2008) Mathew W. Alldredge et al.   JOURNAL OF APPLIED ECOLOGY