Training population selection and use of fixed effects to optimize genomic predictions in a historical USA winter wheat panel

Enhancing genomic prediction with genome-wide association studies in multiparental maize populations

(2017) Y Bian et al.   HEREDITY

Optimizing Training Population Size and Genotyping Strategy for Genomic Prediction Using Association Study Results and Pedigree Information. A Case of Study in Advanced Wheat Breeding Lines

(2017) Fabio Cericola et al.   PLoS One

Genotype Imputation with Millions of Reference Samples

(2016) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Genome-wide prediction models that incorporate de novo GWAS are a powerful new tool for tropical rice improvement

(2016) J E Spindel et al.   HEREDITY

Comparing genomic selection and marker-assisted selection for Fusarium head blight resistance in wheat (Triticum aestivum L.)

(2016) M. P. Arruda et al.   MOLECULAR BREEDING

Model training across multiple breeding cycles significantly improves genomic prediction accuracy in rye (Secale cereale L.)

(2016) Hans-Jürgen Auinger et al.   THEORETICAL AND APPLIED GENETICS

Optimizing Training Population Data and Validation of Genomic Selection for Economic Traits in Soft Winter Wheat

(2016) Amber Hoffstetter et al.   G3-Genes Genomes Genetics

GAPIT Version 2: An Enhanced Integrated Tool for Genomic Association and Prediction

(2016) You Tang et al.   Plant Genome

Heading Date QTL in Winter Wheat (Triticum aestivum L.) Coincide with Major Developmental Genes VERNALIZATION1 and PHOTOPERIOD1

(2016) Mohammed Guedira et al.   PLoS One

Genomic Selection for Predicting Head Blight Resistance in a Wheat Breeding Program

(2015) Marcio P. Arruda et al.   Plant Genome

Vernalization Duration Requirement in Soft Winter Wheat is Associated with Variation at the Locus

(2014) Mohammed Guedira et al.   CROP SCIENCE

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

Whole Genome Association Mapping of Plant Height in Winter Wheat (Triticum aestivum L.)

(2014) Christine D. Zanke et al.   PLoS One

Applying association mapping and genomic selection to the dissection of key traits in elite European wheat

(2014) Alison R. Bentley et al.   THEORETICAL AND APPLIED GENETICS

The impact of population structure on genomic prediction in stratified populations

(2014) Zhigang Guo et al.   THEORETICAL AND APPLIED GENETICS

Training set optimization under population structure in genomic selection

(2014) Julio Isidro et al.   THEORETICAL AND APPLIED GENETICS

Genomewide Selection when Major Genes Are Known

(2013) Rex Bernardo   CROP SCIENCE

The use of unbalanced historical data for genomic selection in an international wheat breeding program

(2013) Julie C. Dawson et al.   FIELD CROPS RESEARCH

Genomic BLUP Decoded: A Look into the Black Box of Genomic Prediction

(2013) D. Habier et al.   GENETICS

Genomic prediction in CIMMYT maize and wheat breeding programs

(2013) J Crossa et al.   HEREDITY

Genomic Prediction in Maize Breeding Populations with Genotyping-by-Sequencing

(2013) José Crossa et al.   G3-Genes Genomes Genetics

Genomic Selection Accuracy using Historical Data Generated in a Wheat Breeding Program

(2013) Eric Storlie et al.   Plant Genome

synbreed: a framework for the analysis of genomic prediction data using R

(2012) Valentin Wimmer et al.   BIOINFORMATICS

GAPIT: genome association and prediction integrated tool

(2012) Alexander E. Lipka et al.   BIOINFORMATICS

Whole-Genome Regression and Prediction Methods Applied to Plant and Animal Breeding

(2012) G. de los Campos et al.   GENETICS

Maximizing the Reliability of Genomic Selection by Optimizing the Calibration Set of Reference Individuals: Comparison of Methods in Two Diverse Groups of Maize Inbreds (Zea mays L.)

(2012) R. Rincent et al.   GENETICS

Copy Number Variation Affecting the Photoperiod-B1 and Vernalization-A1 Genes Is Associated with Altered Flowering Time in Wheat (Triticum aestivum)

(2012) Aurora Díaz et al.   PLoS One

Evaluation of Genomic Prediction Methods for Fusarium Head Blight Resistance in Wheat

(2012) Jessica Rutkoski et al.   Plant Genome

Population Structure, Linkage Disequilibrium, and Genetic Diversity in Soft Winter Wheat Enriched for Fusarium Head Blight Resistance

(2012) Jared Benson et al.   Plant Genome

Genomic Selection in Wheat Breeding using Genotyping-by-Sequencing

(2012) Jesse Poland et al.   Plant Genome

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP

(2011) Jeffrey B. Endelman   Plant Genome

Meta-QTL analysis of the genetic control of crop height in elite European winter wheat germplasm

(2010) Simon Griffiths et al.   MOLECULAR BREEDING

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Invited review: Genomic selection in dairy cattle: Progress and challenges

(2009) B.J. Hayes et al.   JOURNAL OF DAIRY SCIENCE