Genomic signatures of G-protein-coupled receptor expansions reveal functional transitions in the evolution of cephalopod signal transduction

Emergence of a cholecystokinin/sulfakinin signalling system in Lophotrochozoa

(2018) Julie Schwartz et al.   Scientific Reports

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species

(2017) Paul Julian Kersey et al.   NUCLEIC ACIDS RESEARCH

Cadherin genes and evolutionary novelties in the octopus

(2017) Z. Yan Wang et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Topologically associated domains: a successful scaffold for the evolution of gene regulation in animals

(2017) Rafael D. Acemel et al.   Wiley Interdisciplinary Reviews-Developmental Biology

The cephalopod arm crown: appendage formation and differentiation in the Hawaiian bobtail squid Euprymna scolopes

(2016) Marie-Therese Nödl et al.   Frontiers in Zoology

InterPro in 2017—beyond protein family and domain annotations

(2016) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

UniProt: the universal protein knowledgebase

(2016)   NUCLEIC ACIDS RESEARCH

ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data

(2016) Guangchuang Yu et al.   Methods in Ecology and Evolution

Tissue-Specificity of Gene Expression Diverges Slowly between Orthologs, and Rapidly between Paralogs

(2016) Nadezda Kryuchkova-Mostacci et al.   PLoS Computational Biology

Methuselah/Methuselah-like G protein-coupled receptors constitute an ancient metazoan gene family

(2016) Alexandre de Mendoza et al.   Scientific Reports

Outside-in signaling - a brief review of GPCR signaling with a focus on the Drosophila GPCR family

(2015) C. D. Hanlon et al.   JOURNAL OF CELL SCIENCE

Visual phototransduction components in cephalopod chromatophores suggest dermal photoreception

(2015) A. C. N. Kingston et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The octopus genome and the evolution of cephalopod neural and morphological novelties

(2015) Caroline B. Albertin et al.   NATURE

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Reconciling the deep homology of neuromodulation with the evolution of behavior

(2014) Paul S Katz et al.   CURRENT OPINION IN NEUROBIOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Drosophila melanogaster methuselah Gene: A Novel Gene with Ancient Functions

(2013) Ana Rita Araújo et al.   PLoS One

Global view of the evolution and diversity of metazoan neuropeptide signaling

(2013) G. Jekely   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dramatic Expansion and Developmental Expression Diversification of the Methuselah Gene Family During Recent Drosophila Evolution

(2012) MEGHNA V. PATEL et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Evolution of GPCR: Change and continuity

(2010) Rainer Strotmann et al.   MOLECULAR AND CELLULAR ENDOCRINOLOGY

The evolution of gene duplications: classifying and distinguishing between models

(2010) Hideki Innan et al.   NATURE REVIEWS GENETICS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

The Caenorhabditis chemoreceptor gene families

(2008) James H Thomas et al.   BMC BIOLOGY

Octopuses

(2008) Binyamin Hochner   CURRENT BIOLOGY

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

Adhesion-GPCRs: emerging roles for novel receptors

(2008) Simon Yona et al.   TRENDS IN BIOCHEMICAL SCIENCES