Evolution of resilience in protein interactomes across the tree of life

Major New Microbial Groups Expand Diversity and Alter our Understanding of the Tree of Life

(2018) Cindy J. Castelle et al.   CELL

An interactome perturbation framework prioritizes damaging missense mutations for developmental disorders

(2018) Siwei Chen et al.   NATURE GENETICS

Machine Learning for Integrating Data in Biology and Medicine: Principles, Practice, and Opportunities

(2018) Marinka Zitnik et al.   Information Fusion

Architecture of the human interactome defines protein communities and disease networks

(2017) Edward L. Huttlin et al.   NATURE

1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

(2017) Supratim Mukherjee et al.   NATURE BIOTECHNOLOGY

Evolutionary biology through the lens of budding yeast comparative genomics

(2017) Souhir Marsit et al.   NATURE REVIEWS GENETICS

Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life

(2017) Donovan H. Parks et al.   Nature Microbiology

A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human

(2016) Tommy V. Vo et al.   CELL

Predicting Protein–Protein Interactions from the Molecular to the Proteome Level

(2016) Ozlem Keskin et al.   CHEMICAL REVIEWS

Network biology concepts in complex disease comorbidities

(2016) Jessica Xin Hu et al.   NATURE REVIEWS GENETICS

Evolution of protein phosphorylation across 18 fungal species

(2016) R. A. Studer et al.   SCIENCE

Higher-order organization of complex networks

(2016) A. R. Benson et al.   SCIENCE

A new view of the tree of life

(2016) Laura A. Hug et al.   Nature Microbiology

Potential unsatisfiability of cyclic constraints on stochastic biological networks biases selection towards hierarchical architectures

(2015) Cameron Smith et al.   Journal of the Royal Society Interface

Intersecting transcription networks constrain gene regulatory evolution

(2015) Trevor R. Sorrells et al.   NATURE

A Proteome-Scale Map of the Human Interactome Network

(2014) Thomas Rolland et al.   CELL

Single-Cell RNA-Seq Reveals Dynamic, Random Monoallelic Gene Expression in Mammalian Cells

(2014) Q. Deng et al.   SCIENCE

A latent capacity for evolutionary innovation through exaptation in metabolic systems

(2013) Aditya Barve et al.   NATURE

Molecular phylogenetics: principles and practice

(2012) Ziheng Yang et al.   NATURE REVIEWS GENETICS

Evidence for Network Evolution in an Arabidopsis Interactome Map

(2011) et al.   SCIENCE

Robustness: mechanisms and consequences

(2009) Joanna Masel et al.   TRENDS IN GENETICS

Metabolic-network-driven analysis of bacterial ecological strategies

(2009) Shiri Freilich et al.   GENOME BIOLOGY

Survival of the sparsest: robust gene networks are parsimonious

(2008) Robert D Leclerc   Molecular Systems Biology

An empirical framework for binary interactome mapping

(2008) Kavitha Venkatesan et al.   NATURE METHODS

Conservation and Rewiring of Functional Modules Revealed by an Epistasis Map in Fission Yeast

(2008) A. Roguev et al.   SCIENCE