A precedented nuclear genetic code with all three termination codons reassigned as sense codons in the syndinean Amoebophrya sp. ex Karlodinium veneficum

A global ocean atlas of eukaryotic genes

(2018) Quentin Carradec et al.   Nature Communications

Genetic Codes with No Dedicated Stop Codon: Context-Dependent Translation Termination

(2016) Estienne Carl Swart et al.   CELL

An Unprecedented Non-canonical Nuclear Genetic Code with All Three Termination Codons Reassigned as Sense Codons

(2016) Kristína Záhonová et al.   CURRENT BIOLOGY

Novel Ciliate Genetic Code Variants Including the Reassignment of All Three Stop Codons to Sense Codons inCondylostoma magnum

(2016) Stephen M. Heaphy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fine-Tuning Motile Cilia and Flagella: Evolution of the Dynein Motor Proteins from Plants to Humans at High Resolution

(2016) Martin Kollmar   MOLECULAR BIOLOGY AND EVOLUTION

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics

(2016) Jan Janouškovec et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

Tara Oceans studies plankton at planetary scale

(2015) P. Bork et al.   SCIENCE

Genomic Insights into Processes Driving the Infection of Alexandrium tamarense by the Parasitoid Amoebophrya sp.

(2014) Yameng Lu et al.   EUKARYOTIC CELL

Dinoflagellate phylogeny revisited: Using ribosomal proteins to resolve deep branching dinoflagellate clades

(2013) Tsvetan R. Bachvaroff et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Obligately Phagotrophic Aphelids Turned out to Branch with the Earliest-diverging Fungi

(2012) Sergey A. Karpov et al.   PROTIST

Molecular Diversity of the Syndinean Genus Euduboscquella Based on Single-Cell PCR Analysis

(2011) Tsvetan R. Bachvaroff et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

FACIL: Fast and Accurate Genetic Code Inference and Logo

(2011) Bas E. Dutilh et al.   BIOINFORMATICS

The Mitochondrial Genome and Transcriptome of the Basal Dinoflagellate Hematodinium sp.: Character Evolution within the Highly Derived Mitochondrial Genomes of Dinoflagellates

(2011) C. J. Jackson et al.   Genome Biology and Evolution

Evidence of abundant stop codon readthrough in Drosophila and other metazoa

(2011) I. Jungreis et al.   GENOME RESEARCH

Karlodinium veneficum—The little dinoflagellate with a big bite

(2011) Allen R. Place et al.   HARMFUL ALGAE

Genome Sequence of the Algicidal Bacterium Kordia algicida OT-1

(2011) H. S. Lee et al.   JOURNAL OF BACTERIOLOGY

Alveolate Phylogeny Inferred using Concatenated Ribosomal Proteins

(2011) TSVETAN R. BACHVAROFF et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Complex phylogenetic distribution of a non-canonical genetic code in green algae

(2010) Ellen Cocquyt et al.   BMC EVOLUTIONARY BIOLOGY

SECISaln, a web-based tool for the creation of structure-based alignments of eukaryotic SECIS elements

(2009) Charles E. Chapple et al.   BIOINFORMATICS

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Expressed Sequence Tags fromAmoebophryasp. InfectingKarlodinium veneficum: Comparing Host and Parasite Sequences

(2009) TSVETAN R. BACHVAROFF et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Widespread occurrence and genetic diversity of marine parasitoids belonging toSyndiniales(Alveolata)

(2008) L. Guillou et al.   ENVIRONMENTAL MICROBIOLOGY

A novel stem loop control element-dependent UGA read-through system without translational selenocysteine incorporation in Drosophila

(2008) Mitsuko Hirosawa-Takamori et al.   FASEB JOURNAL

Patterns of Codon Usage in two Ciliates that Reassign the Genetic Code: Tetrahymena thermophila and Paramecium tetraurelia

(2008) Hannah M.W. Salim et al.   PROTIST