The ability of locked nucleic acid oligonucleotides to pre-structure the double helix: A molecular simulation and binding study

Modeling pK Shift in DNA Triplexes Containing Locked Nucleic Acids

(2018) Yossa Dwi Hartono et al.   Journal of Chemical Information and Modeling

LNA effects on DNA binding and conformation: from single strand to duplex and triplex structures

(2017) Y. Vladimir Pabon-Martinez et al.   Scientific Reports

Additive CHARMM force field for naturally occurring modified ribonucleotides

(2016) You Xu et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Oligonucleotide Therapies: The Past and the Present

(2015) Karin E. Lundin et al.   HUMAN GENE THERAPY

Atomistic Investigation of the Effect of Incremental Modification of Deoxyribose Sugars by Locked Nucleic Acid (β-d-LNA and α-l-LNA) Moieties on the Structures and Thermodynamics of DNA–RNA Hybrid Duplexes

(2014) Gorle Suresh et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Interplay of LNA and 2′-O-Methyl RNA in the Structure and Thermodynamics of RNA Hybrid Systems: A Molecular Dynamics Study Using the Revised AMBER Force Field and Comparison with Experimental Results

(2014) Ilyas Yildirim et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Triple helical DNA in a duplex context and base pair opening

(2014) Mauricio Esguerra et al.   NUCLEIC ACIDS RESEARCH

Structures, Dynamics, and Stabilities of Fully Modified Locked Nucleic Acid (β-d-LNA and α-l-LNA) Duplexes in Comparison to Pure DNA and RNA Duplexes

(2013) Gorle Suresh et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Optimization of the CHARMM Additive Force Field for DNA: Improved Treatment of the BI/BII Conformational Equilibrium

(2011) Katarina Hart et al.   Journal of Chemical Theory and Computation

Accelerating molecular dynamic simulation on graphics processing units

(2009) Mark S. Friedrichs et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

CHARMM: The biomolecular simulation program

(2009) B. R. Brooks et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Web 3DNA--a web server for the analysis, reconstruction, and visualization of three-dimensional nucleic-acid structures

(2009) G. Zheng et al.   NUCLEIC ACIDS RESEARCH

Conformational analysis of nucleic acids revisited: Curves+

(2009) R. Lavery et al.   NUCLEIC ACIDS RESEARCH