Inferring statistical properties of 3D cell geometry from 2D slices

Inferring cellular forces from image stacks

(2017) Jim H. Veldhuis et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Real-Time Three-Dimensional Cell Segmentation in Large-Scale Microscopy Data of Developing Embryos

(2016) Johannes Stegmaier et al.   DEVELOPMENTAL CELL

Glass transitions in the cellular Potts model

(2016) M. Chiang et al.   EPL

Cell size and growth regulation in theArabidopsis thalianaapical stem cell niche

(2016) Lisa Willis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

TissueMiner: A multiscale analysis toolkit to quantify how cellular processes create tissue dynamics

(2016) Raphaël Etournay et al.   eLife

Limits of Applicability of the Voronoi Tessellation Determined by Centers of Cell Nuclei to Epithelium Morphology

(2016) Sara Kaliman et al.   Frontiers in Physiology

Unjamming and cell shape in the asthmatic airway epithelium

(2015) Jin-Ah Park et al.   NATURE MATERIALS

A density-independent rigidity transition in biological tissues

(2015) Dapeng Bi et al.   Nature Physics

Interplay of cell dynamics and epithelial tension during morphogenesis of the Drosophila pupal wing

(2015) Raphaël Etournay et al.   eLife

CellFIT: A Cellular Force-Inference Toolkit Using Curvilinear Cell Boundaries

(2014) G. Wayne Brodland et al.   PLoS One

scikit-image: image processing in Python

(2014) Stéfan van der Walt et al.   PeerJ

Slow and anomalous dynamics of an MCF-10A epithelial cell monolayer

(2013) Kenechukwu David Nnetu et al.   Soft Matter

Enabling user-guided segmentation and tracking of surface-labeled cells in time-lapse image sets of living tissues

(2012) David N. Mashburn et al.   CYTOMETRY PART A

Multiview light-sheet microscope for rapid in toto imaging

(2012) Uros Krzic et al.   NATURE METHODS

Mechanical Stress Inference for Two Dimensional Cell Arrays

(2012) Kevin K. Chiou et al.   PLoS Computational Biology

Glass-like dynamics of collective cell migration

(2011) T. E. Angelini et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy

(2008) P. J. Keller et al.   SCIENCE