Dynamic reorganization of the genome shapes the recombination landscape in meiotic prophase

Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers

(2018) Jian Yan et al.   CELL RESEARCH

Characterizing meiotic chromosomes' structure and pairing using a designer sequence optimized for Hi‐C

(2018) Héloïse Muller et al.   Molecular Systems Biology

Imaging dynamic and selective low-complexity domain interactions that control gene transcription

(2018) Shasha Chong et al.   SCIENCE

Coactivator condensation at super-enhancers links phase separation and gene control

(2018) Benjamin R. Sabari et al.   SCIENCE

Mediator and RNA polymerase II clusters associate in transcription-dependent condensates

(2018) Won-Ki Cho et al.   SCIENCE

A pathway for mitotic chromosome formation

(2018) Johan H. Gibcus et al.   SCIENCE

PRDM9 and Its Role in Genetic Recombination

(2018) Kenneth Paigen et al.   TRENDS IN GENETICS

Bladder Cancer: 4 Big questions

(2017) Chris Berdik   NATURE

Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition

(2017) Ilya M. Flyamer et al.   NATURE

The Landscape of Mouse Meiotic Double-Strand Break Formation, Processing, and Repair

(2016) Julian Lange et al.   CELL

The evolutionary turnover of recombination hot spots contributes to speciation in mice

(2016) Fatima Smagulova et al.   GENES & DEVELOPMENT

Transferable model for chromosome architecture

(2016) Michele Di Pierro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distinct Roles of Meiosis-Specific Cohesin Complexes in Mammalian Spermatogenesis

(2016) Uddipta Biswas et al.   PLoS Genetics

Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

(2016) Neva C. Durand et al.   Cell Systems

Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom

(2016) Neva C. Durand et al.   Cell Systems

Meiotic Silencing in Mammals

(2015) James M.A. Turner   Annual Review of Genetics

Chromosomes Progress to Metaphase in Multiple Discrete Steps via Global Compaction/Expansion Cycles

(2015) Zhangyi Liang et al.   CELL

Complex elaboration: making sense of meiotic cohesin dynamics

(2015) Susannah Rankin   FEBS Journal

Dgcr8 and Dicer are essential for sex chromosome integrity during meiosis in males

(2015) A. J. Modzelewski et al.   JOURNAL OF CELL SCIENCE

Chromatin architecture reorganization during stem cell differentiation

(2015) Jesse R. Dixon et al.   NATURE

WASP: allele-specific software for robust molecular quantitative trait locus discovery

(2015) Bryce van de Geijn et al.   NATURE METHODS

piRNA cluster database: a web resource for piRNA producing loci

(2015) David Rosenkranz   NUCLEIC ACIDS RESEARCH

Affinity-seq detects genome-wide PRDM9 binding sites and reveals the impact of prior chromatin modifications on mammalian recombination hotspot usage

(2015) Michael Walker et al.   Epigenetics & Chromatin

PRDM9 Drives Evolutionary Erosion of Hotspots in Mus musculus through Haplotype-Specific Initiation of Meiotic Recombination

(2015) Christopher L. Baker et al.   PLoS Genetics

Self-Organization of Meiotic Recombination Initiation: General Principles and Molecular Pathways

(2014) Scott Keeney et al.   Annual Review of Genetics

Integrated transcriptome analysis of mouse spermatogenesis

(2014) Gennady Margolin et al.   BMC GENOMICS

A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping

(2014) Suhas S.P. Rao et al.   CELL

Imaging RNA Polymerase II transcription sites in living cells

(2014) Martin S Buckley et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

High-Resolution Sex-Specific Linkage Maps of the Mouse Reveal Polarized Distribution of Crossovers in Male Germline

(2014) Eric Yi Liu et al.   GENETICS

Topoisomerase II mediates meiotic crossover interference

(2014) Liangran Zhang et al.   NATURE

Mouse tetrad analysis provides insights into recombination mechanisms and hotspot evolutionary dynamics

(2014) Francesca Cole et al.   NATURE GENETICS

Modeling epigenome folding: formation and dynamics of topologically associated chromatin domains

(2014) Daniel Jost et al.   NUCLEIC ACIDS RESEARCH

Turning a Spermatogenic Wave into a Tsunami: Synchronizing Murine Spermatogenesis Using WIN 18,4461

(2013) Cathryn A. Hogarth et al.   BIOLOGY OF REPRODUCTION

Roles of Cohesin and Condensin in Chromosome Dynamics During Mammalian Meiosis

(2013) Jibak LEE   JOURNAL OF REPRODUCTION AND DEVELOPMENT

An Ancient Transcription Factor Initiates the Burst of piRNA Production during Early Meiosis in Mouse Testes

(2013) Xin Zhiguo Li et al.   MOLECULAR CELL

Organization of the Mitotic Chromosome

(2013) N. Naumova et al.   SCIENCE

proTRAC - a software for probabilistic piRNA cluster detection, visualization and analysis

(2012) David Rosenkranz et al.   BMC BIOINFORMATICS

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Inactivation or non-reactivation: what accounts better for the silence of sex chromosomes during mammalian male meiosis?

(2012) Jesús Page et al.   CHROMOSOMA

A fast algorithm for matrix balancing

(2012) P. A. Knight et al.   IMA JOURNAL OF NUMERICAL ANALYSIS

Genetic recombination is directed away from functional genomic elements in mice

(2012) Kevin Brick et al.   NATURE

Topological domains in mammalian genomes identified by analysis of chromatin interactions

(2012) Jesse R. Dixon et al.   NATURE

Iterative correction of Hi-C data reveals hallmarks of chromosome organization

(2012) Maxim Imakaev et al.   NATURE METHODS

Human Male Meiotic Sex Chromosome Inactivation

(2012) Marieke de Vries et al.   PLoS One

Spo11-Accessory Proteins Link Double-Strand Break Sites to the Chromosome Axis in Early Meiotic Recombination

(2011) Silvia Panizza et al.   CELL

A Hierarchical Combination of Factors Shapes the Genome-wide Topography of Yeast Meiotic Recombination Initiation

(2011) Jing Pan et al.   CELL

Mouse genomic variation and its effect on phenotypes and gene regulation

(2011) Thomas M. Keane et al.   NATURE

PIWI-interacting small RNAs: the vanguard of genome defence

(2011) Mikiko C. Siomi et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The key role of vitamin A in spermatogenesis

(2010) Cathryn A. Hogarth et al.   JOURNAL OF CLINICAL INVESTIGATION

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

(2009) E. Lieberman-Aiden et al.   SCIENCE

Cohesin Smc1β determines meiotic chromatin axis loop organization

(2008) Ivana Novak et al.   JOURNAL OF CELL BIOLOGY