Repeated Phenotypic Evolution by Different Genetic Routes in Pseudomonas fluorescens SBW25

Interplay Between Capsule Expression and Uracil Metabolism in Streptococcus pneumoniae D39

(2018) Sandra M. Carvalho et al.   Frontiers in Microbiology

The Global Response of Cronobacter sakazakii Cells to Amino Acid Deficiency

(2018) Si Chen et al.   Frontiers in Microbiology

NlpD links cell wall remodeling and outer membrane invagination during cytokinesis in Escherichia coli

(2017) Mary-Jane Tsang et al.   PLoS Genetics

Analyzing the Complex Regulatory Landscape of Hfq – an Integrative, Multi-Omics Approach

(2017) Lucia Grenga et al.   Frontiers in Microbiology

Evolutionary convergence in experimental Pseudomonas populations

(2016) Peter A Lind et al.   ISME Journal

Compensating the Fitness Costs of Synonymous Mutations

(2016) Anna Knöppel et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Gonococcal NlpD Protein Facilitates Cell Separation by Activating Peptidoglycan Cleavage by AmiC

(2015) Elizabeth A. Stohl et al.   JOURNAL OF BACTERIOLOGY

Regulation of Bacterial Virulence by Csr (Rsm) Systems

(2015) Christopher A. Vakulskas et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Systems-Level Response to Point Mutations in a Core Metabolic Enzyme Modulates Genotype-Phenotype Relationship

(2015) Shimon Bershtein et al.   Cell Reports

Bistability in a Metabolic Network Underpins the De Novo Evolution of Colony Switching in Pseudomonas fluorescens

(2015) Jenna Gallie et al.   PLOS BIOLOGY

Elucidation of Sigma Factor-Associated Networks in Pseudomonas aeruginosa Reveals a Modular Architecture with Limited and Function-Specific Crosstalk

(2015) Sebastian Schulz et al.   PLoS Pathogens

Experimental evolution reveals hidden diversity in evolutionary pathways

(2015) Peter A Lind et al.   eLife

HTSeq--a Python framework to work with high-throughput sequencing data

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Cell Separation in Vibrio cholerae Is Mediated by a Single Amidase Whose Action Is Modulated by Two Nonredundant Activators

(2014) A. Moll et al.   JOURNAL OF BACTERIOLOGY

A Model for Sigma Factor Competition in Bacterial Cells

(2014) Marco Mauri et al.   PLoS Computational Biology

A single mutation in the GSTe2 gene allows tracking of metabolically based insecticide resistance in a major malaria vector

(2014) Jacob M Riveron et al.   GENOME BIOLOGY

Evolutionary rescue from extinction is contingent on a lower rate of environmental change

(2013) Haley A. Lindsey et al.   NATURE

The structure and evolution ofcis-regulatory regions: theshavenbabystory

(2013) David L. Stern et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Biosynthesis and Function of Posttranscriptional Modifications of Transfer RNAs

(2012) Basma El Yacoubi et al.   Annual Review of Genetics

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Repeatability and Contingency in the Evolution of a Key Innovation in Phage Lambda

(2012) J. R. Meyer et al.   SCIENCE

The C4 plant lineages of planet Earth

(2011) R. F. Sage et al.   JOURNAL OF EXPERIMENTAL BOTANY

The evolutionary emergence of stochastic phenotype switching in bacteria

(2011) Paul B Rainey et al.   Microbial Cell Factories

Exclusion rules, bottlenecks and the evolution of stochastic phenotype switching

(2011) E. Libby et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Daughter cell separation is controlled by cytokinetic ring-activated cell wall hydrolysis

(2010) Tsuyoshi Uehara et al.   EMBO JOURNAL

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Adaptive Divergence in Experimental Populations of Pseudomonas fluorescens. IV. Genetic Constraints Guide Evolutionary Trajectories in a Parallel Adaptive Radiation

(2009) M. J. McDonald et al.   GENETICS

The GacS/GacA signal transduction system ofPseudomonas aeruginosaacts exclusively through its control over the transcription of the RsmY and RsmZ regulatory small RNAs

(2009) Anja Brencic et al.   MOLECULAR MICROBIOLOGY

Experimental evolution of bet hedging

(2009) Hubertus J. E. Beaumont et al.   NATURE

The NlpD Lipoprotein Is a Novel Yersinia pestis Virulence Factor Essential for the Development of Plague

(2009) Avital Tidhar et al.   PLoS One

Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens

(2009) Mark W Silby et al.   GENOME BIOLOGY

Transcriptome Analysis of the Lactococcus lactis ArgR and AhrC Regulons

(2008) R. Larsen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Convergence and parallelism reconsidered: what have we learned about the genetics of adaptation?

(2007) J ARENDT et al.   TRENDS IN ECOLOGY & EVOLUTION