Imaging and Analysis of Cellular Locations in Three-Dimensional Tissue Models

TrackMate: An open and extensible platform for single-particle tracking

(2017) Jean-Yves Tinevez et al.   METHODS

An alginate-based platform for cancer stem cell research

(2016) Shu-pei Qiao et al.   Acta Biomaterialia

ECM and ECM-like materials — Biomaterials for applications in regenerative medicine and cancer therapy

(2016) Svenja Hinderer et al.   ADVANCED DRUG DELIVERY REVIEWS

Three-dimensional cell culture model utilization in cancer stem cell research

(2016) Zofia F. Bielecka et al.   BIOLOGICAL REVIEWS

Ultra-High Resolution 3D Imaging of Whole Cells

(2016) Fang Huang et al.   CELL

Shrinkage-mediated imaging of entire organs and organisms using uDISCO

(2016) Chenchen Pan et al.   NATURE METHODS

Poisson-event-based analysis of cell proliferation

(2015) Huw D. Summers et al.   CYTOMETRY PART A

Biomedical applications of hydrogels: A review of patents and commercial products

(2015) Enrica Caló et al.   EUROPEAN POLYMER JOURNAL

Spherical Cancer Models in Tumor Biology

(2015) Louis-Bastien Weiswald et al.   NEOPLASIA

Matrix-driven formation of mesenchymal stem cell–extracellular matrix microtissues on soft alginate hydrogels

(2014) F. Raquel Maia et al.   Acta Biomaterialia

Hydrogels for 3D mammalian cell culture: a starting guide for laboratory practice

(2014) Ferdinand Ruedinger et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Whole-Brain Imaging with Single-Cell Resolution Using Chemical Cocktails and Computational Analysis

(2014) Etsuo A. Susaki et al.   CELL

Light-sheet microscopy using an Airy beam

(2014) Tom Vettenburg et al.   NATURE METHODS

Multicolor two-photon light-sheet microscopy

(2014) Pierre Mahou et al.   NATURE METHODS

3D live fluorescence imaging of cellular dynamics using Bessel beam plane illumination microscopy

(2014) Liang Gao et al.   Nature Protocols

Uniform and scalable light-sheets generated by extended focusing

(2014) Kevin M. Dean et al.   OPTICS EXPRESS

Noise in biology

(2014) Lev S Tsimring   REPORTS ON PROGRESS IN PHYSICS

Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution

(2014) Bi-Chang Chen et al.   SCIENCE

Correlative two-photon and light sheet microscopy

(2013) Ludovico Silvestri et al.   METHODS

Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy

(2013) Yicong Wu et al.   NATURE BIOTECHNOLOGY

Whole-brain functional imaging at cellular resolution using light-sheet microscopy

(2013) Misha B Ahrens et al.   NATURE METHODS

CLARITY for mapping the nervous system

(2013) Kwanghun Chung et al.   NATURE METHODS

In vivo three-photon microscopy of subcortical structures within an intact mouse brain

(2013) Nicholas G. Horton et al.   Nature Photonics

Rapid 3D light-sheet microscopy with a tunable lens

(2013) Florian O. Fahrbach et al.   OPTICS EXPRESS

Three-dimensional cell culture: the missing link in drug discovery

(2012) Susan Breslin et al.   DRUG DISCOVERY TODAY

Generation of All-in-Focus Images by Noise-Robust Selective Fusion of Limited Depth-of-Field Images

(2012) Said Pertuz et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING

Serial two-photon tomography for automated ex vivo mouse brain imaging

(2012) Timothy Ragan et al.   NATURE METHODS

Multiview light-sheet microscope for rapid in toto imaging

(2012) Uros Krzic et al.   NATURE METHODS

Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy

(2012) Raju Tomer et al.   NATURE METHODS

Light sheet microscopy of living or cleared specimens

(2011) Philipp J Keller et al.   CURRENT OPINION IN NEUROBIOLOGY

Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination

(2011) Thomas A Planchon et al.   NATURE METHODS

Optical sectioning microscopy with planar or structured illumination

(2011) Jerome Mertz   NATURE METHODS

Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain

(2011) Hiroshi Hama et al.   NATURE NEUROSCIENCE

Quantitative characterization of fluorophores in multi-component nanoprobes by single-molecule fluorescence

(2011) Ambika Bumb et al.   Biomedical Optics Express

A Review of Three-Dimensional In Vitro Tissue Models for Drug Discovery and Transport Studies

(2010) Nelita T. Elliott et al.   JOURNAL OF PHARMACEUTICAL SCIENCES

Software for bead-based registration of selective plane illumination microscopy data

(2010) Stephan Preibisch et al.   NATURE METHODS

Fast, high-contrast imaging of animal development with scanned light sheet–based structured-illumination microscopy

(2010) Philipp J Keller et al.   NATURE METHODS

Light Sheet Microscopy for Single Molecule Tracking in Living Tissue

(2010) Jörg Gerhard Ritter et al.   PLoS One

A cylindrical zoom lens unit for adjustable optical sectioning in light sheet microscopy

(2010) Jörg G. Ritter et al.   Biomedical Optics Express

Statistical Analysis of 3D Images Detects Regular Spatial Distributions of Centromeres and Chromocenters in Animal and Plant Nuclei

(2010) Philippe Andrey et al.   PLoS Computational Biology

Globally optimal stitching of tiled 3D microscopic image acquisitions

(2009) S. Preibisch et al.   BIOINFORMATICS

Hydrogels as extracellular matrix mimics for 3D cell culture

(2009) Mark W. Tibbitt et al.   BIOTECHNOLOGY AND BIOENGINEERING

Experimental characterization of 3D localization techniques for particle-tracking and super-resolution microscopy

(2009) Michael J. Mlodzianoski et al.   OPTICS EXPRESS

Light sheet‐based fluorescence microscopy: More dimensions, more photons, and less photodamage

(2008) Emmanuel G. Reynaud et al.   HFSP Journal

Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy

(2008) P. J. Keller et al.   SCIENCE